>retro_rnor_1216
ATGGGGAAGCGACAGCACCAGAAGGACAAGATGTACATCACCTGTGCCGAGTACATTCATTTCTATGGTGGCAGGAAGCC
AGATATCACACAGACAAGTTTTCGCCGCTTACCTTTTGACCACTGCAGTCTCTCTCTCCAGCCTTTTGTCTACCCAGTCT
GCACCCCGGAAGGTGTTGTCTTTGACTTGCTGAACATTGTCCCATGGCTTAAGAAGTATGGGACCAATCCGAACACTGGA
GAGAAACTTGATGGGAAGTCCCTGATTAAGCTGAACTTTGCGAAGAACAGTGAAGGGCAGTACCACTGTCCAGTGCTGTA
CTCCGTGTTCACTGATAACATCCACATCGTGGCCATCAGGACAACTGGCAATGTCTACACCTATGAGGCAGTGGAGCAGC
TAAACATCAAGGCCAGGAACTTGAGGGACCTGTTAACTGATGAGCCCTTTTCCAGGCAAGACATCATCACCCTGCAGGAC
CCCACCAATTTGGACAAATTTAACGTTAGCAGCTTCTTCCATGTGAAGAATAACATGCGAACGATAGATCCAGATGAGGA
AAAGGCCAAACAAGACCCATCTTATTATTTGAAAAATACAAATGCGGAGACCCGAGAGACGCTACAGGAGCTCTACAAAG
AGTTCAAAGGAGATGAGATTTTAGCAGCTACCATGAAGCCACCTGAGAAGAAGAAGGTGGACCAACTAAATGCTGCCCAC
TACTCCACAGGGAAGGTCAGCGCGTCCTTCACCTCTACCGCCATGGTGCCTGAGACCACGCACGAAGCAGCTGTCATTGA
TGAAGATGTCCTGCGCTACCAGTTTGTGAAGAAGAAGGGCTATGTGAGGCTACATACCAACAAGGGCGACCTCAACCTAG
AGCTGCACTGTGACCTGACACCNAAA
ORF - retro_rnor_1216 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.68 % |
Parental protein coverage: |
57.97 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MGKRQHQKDKMYITCAEYTHFYGGRKPDITQTSFRRLPFDHCSLSLQPFVYPVCTPEGVVFDLLNIVPWL |
| MGKRQHQKDKMYITCAEY.HFYGGRKPDITQTSFRRLPFDHCSLSLQPFVYPVCTPEGVVFDLLNIVPWL |
Retrocopy | MGKRQHQKDKMYITCAEYIHFYGGRKPDITQTSFRRLPFDHCSLSLQPFVYPVCTPEGVVFDLLNIVPWL |
|
Parental | KKYGTDPSTGEKLDGKSLIKLNFAKNSEGQYHCPVLYSVFTDNTHIVAIRTTGNVYTYEAVEQLNIKAKN |
| KKYGT.P.TGEKLDGKSLIKLNFAKNSEGQYHCPVLYSVFTDN.HIVAIRTTGNVYTYEAVEQLNIKA.N |
Retrocopy | KKYGTNPNTGEKLDGKSLIKLNFAKNSEGQYHCPVLYSVFTDNIHIVAIRTTGNVYTYEAVEQLNIKARN |
|
Parental | LRDLLTDEPFSRQDIITLQDPTNLDKFNVSSFFHVKNNMRMIDPDEEKAKQDPSYYLKNTNAETRETLQE |
| LRDLLTDEPFSRQDIITLQDPTNLDKFNVSSFFHVKNNMR.IDPDEEKAKQDPSYYLKNTNAETRETLQE |
Retrocopy | LRDLLTDEPFSRQDIITLQDPTNLDKFNVSSFFHVKNNMRTIDPDEEKAKQDPSYYLKNTNAETRETLQE |
|
Parental | LYKEFKGDEILAATMKPPEKKKVDQLNAAHYSTGKVSASFTSTAMVPETTHEAAVIDEDVLRYQFVKKKG |
| LYKEFKGDEILAATMKPPEKKKVDQLNAAHYSTGKVSASFTSTAMVPETTHEAAVIDEDVLRYQFVKKKG |
Retrocopy | LYKEFKGDEILAATMKPPEKKKVDQLNAAHYSTGKVSASFTSTAMVPETTHEAAVIDEDVLRYQFVKKKG |
|
Parental | YVRLHTNKGDLNLELHCDLTPK |
| YVRLHTNKGDLNLELHCDLT.K |
Retrocopy | YVRLHTNKGDLNLELHCDLTXK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
26 .60 RPM |
SRP017611_kidney |
0 .00 RPM |
28 .19 RPM |
SRP017611_liver |
0 .00 RPM |
19 .36 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1216 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1216 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1216 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.