>retro_rnor_2707
TTTTTTACCACTGAAGAAGCTAGCTGGTGTAGAGAAACAGAAATCTACCAGACGGTGTTAATGCTTCATGAAAATATACT
TGGTTTTATAGCTGCAGACATTAAAGGCACCGGTTCCTGGACTCAGCTGTATTTGATTACTGATTACCATGAGAATGGGT
CTCTCTATGACTTCCTGAAATGTGCCACCCTGGACACCAGAGCCCTACTCAAGTTAGCTTATTCTGCTGCCTGTGGTCTG
TGCCACCTCCACACAGAAATTTATTGCATGCAAGGAAAGCCTGCAATTGCTCATCGAGACCTGAAGAGCAAAAACATCCT
TATTAAGAAAAATGGGAGTTGCTGTATTGCTGACCTGGGCCTAGCTGTTAAATTCAACAGTGACACAAATGAAGTTGACA
TACCTTTGAACACCAGGGTGGGCACCAGGCGCTACATGGCTCCAGAAGTGCTGGACGAGAGCCTGAGTAAAAACCATTTC
CAGCCCTACATCATGGCTGACATCTACAGCTTTGGTTTGATCATTTGGGAGATGGCCCGTCGCTGTATTACAGGAGGAAT
CGTGGAGGAATATCAATTACCATATTACAACATGGTGCCTAGTGACCCATCTTTTGAAGACATGCGTGAGGTTGTGTGTG
TGAAAAGCTTTCGGCCAATCGTGTCTAACTGCTGGAACAGTGATGAATGTCTTCGAGCCGTTTTGAGGCTGATGTCAGAA
TACTGGGCCCATTATCCAGCCTCCAGACTCACAGCTTTGAGAATCAAGAAGACACTCGCAAAGATGGTTGAATCCCAGGA
TGTAAAGATT
ORF - retro_rnor_2707 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
95.93 % |
Parental protein coverage: |
50.75 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDFLKCATLDTRALL |
| FFTTEEASW.RETEIYQTVLM.HENILGFIAADIKGTGSWTQLYLITDYHENGSLYDFLKCATLDTRALL |
Retrocopy | FFTTEEASWCRETEIYQTVLMLHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDFLKCATLDTRALL |
|
Parental | KLAYSAACGLCHLHTEIYGTQGKPAIAHRDLKSKNILIKKNGSCCIADLGLAVKFNSDTNEVDIPLNTRV |
| KLAYSAACGLCHLHTEIY..QGKPAIAHRDLKSKNILIKKNGSCCIADLGLAVKFNSDTNEVDIPLNTRV |
Retrocopy | KLAYSAACGLCHLHTEIYCMQGKPAIAHRDLKSKNILIKKNGSCCIADLGLAVKFNSDTNEVDIPLNTRV |
|
Parental | GTRRYMAPEVLDESLSKNHFQPYIMADIYSFGLIIWEMARRCITGGIVEEYQLPYYNMVPSDPSYEDMRE |
| GTRRYMAPEVLDESLSKNHFQPYIMADIYSFGLIIWEMARRCITGGIVEEYQLPYYNMVPSDPS.EDMRE |
Retrocopy | GTRRYMAPEVLDESLSKNHFQPYIMADIYSFGLIIWEMARRCITGGIVEEYQLPYYNMVPSDPSFEDMRE |
|
Parental | VVCVKRLRPIVSNRWNSDECLRAVLKLMSECWAHNPASRLTALRIKKTLAKMVESQDVKI |
| VVCVK..RPIVSN.WNSDECLRAVL.LMSE.WAH.PASRLTALRIKKTLAKMVESQDVKI |
Retrocopy | VVCVKSFRPIVSNCWNSDECLRAVLRLMSEYWAHYPASRLTALRIKKTLAKMVESQDVKI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .07 RPM |
32 .64 RPM |
SRP017611_kidney |
0 .00 RPM |
54 .36 RPM |
SRP017611_liver |
0 .00 RPM |
9 .88 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2707 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2707 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2707 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.