>retro_rnor_32
ATGCTTCGTGGCGCGCACAGCCACCTCTCGGCCTCGGTAGCCCTCGCCGCGGTCCTGGCTGTGGCGCTGCTCTCGTCGTT
CGCGCGCTGCTCTCTCCCGGGGCGCGGGGACCCGGTGGCTTCGGTGCTTAGCCCCTACTTCGGCACGAAGACACGCTATG
AAGATGTCAACCCCTGGCTGCTGGGCGACCCGGTGGCGCCGCGACGGGACCCGGAGCTGCTGGCGGGGACTTGCACCCCG
GTGCAGCTGGTCGCCCTCATCCGTCATGGCACCCGCTACCCTACGACCAAGCAGATCCGCAAGCTGAGGCAGCTGCAGGG
GCTGCTGCAGACCCGCGAGTCCGTAGATGGCGGGAGCCGAGTGGCCGCCGCTCTGGACCAATGGCCGCTGTGGTACGATG
ACTGGATGGACGGGCAGCTGGTGGAAAAGGGGCGGCAGGACATGCGACAGCTGGCCCTGCGTCTGGCCGCCCTCTTCCCT
GACCTCTTCTGCCAGGAGAAGTACGGCCGCCTGAGGCTGATCACCAGCTCCAAGCACCACTGTGTGGACAGCAGCGCCGC
CTTCCTCCAAGGGTTGTGGCAACATTACCACCCAGGATTGCCACCTCCCGACGTCTCAGACATGGAGTGTGACCCTCCGA
GAGTTAATGATAAGCTAATGAGGTTCTTCGATCACTGTGAGAAGTTTTTAACCGAAGTCGAAAGAAACGCCACGGCTCTT
TATCATGTGGAAGCCTTCAAAACCGGGCCAGAAATGCAGACAGTTTTAAAGAAAGTTGCAGCCACTTTGCAAGTGCCAGT
GAACAATTTAAATGCAGACTTAATTCAGGTAGCCTTTTTCACCTGTTCGTTTGACCTGGCAGTTCAAGGTGTCCATTCTC
CCTGGTGCGATGTGTTTGATGTAGATGATGCGAAGGTTCTGGAATACTTAAATGATCTGAAACAGTACTGGAAACGAAGT
TATGGCTATGCCATTAACAGCCGGTCCAGCTGCAACCTGTTTCAGGACATTTTTCTACACCTGGACAAAGCAGTTGAGCA
GAAGCAAAGGTCTCAGCCGGTCTCTTCTCCAGTCATCCTCCAGTTTGGTCATGAGGAGACCCTCCTACCCCTGCTCTCGC
TCATGGGCTACTTCAAGGACAAGGAGCCCCTGACAGCATACAATTTTGAGGAGCAGGTGCATCGCGAGTTCCGAAGTGGT
CACATCGTACCGTATGCTTCAAACCTAATATTTGTGCTTTACCATTGTGAAGACGCACAGACCCCTCAAGAAAAATTCCA
GATACAAATGCTGCTGAATGAAAAGGTGTTACCCTTGGCTCACTCGCAGAAAACTGTTGCCTTGTATGAGGATCTGAAGA
ACCACTACCAGGACATTCTTCAGAGCTGTCAAACTAGTAAAGAATGTAACCTACCCAAGGTGAACATCACATCCGACGAG
CTCTGA
ORF - retro_rnor_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.54 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MLRGARSHLSASVALAAVLAAALLSSFARCSLPGRGDPVASVLSPYFGTKTRYEDVNPWLLGDPVAPRRD |
| MLRGA.SHLSASVALAAVLA.ALLSSFARCSLPGRGDPVASVLSPYFGTKTRYEDVNPWLLGDPVAPRRD |
Retrocopy | MLRGAHSHLSASVALAAVLAVALLSSFARCSLPGRGDPVASVLSPYFGTKTRYEDVNPWLLGDPVAPRRD |
|
Parental | PELLAGTCTPVQLVALIRHGTRYPTTKQIRKLRQLQGLLQTRESVDGGSRVAAALDQWPLWYDDWMDGQL |
| PELLAGTCTPVQLVALIRHGTRYPTTKQIRKLRQLQGLLQTRESVDGGSRVAAALDQWPLWYDDWMDGQL |
Retrocopy | PELLAGTCTPVQLVALIRHGTRYPTTKQIRKLRQLQGLLQTRESVDGGSRVAAALDQWPLWYDDWMDGQL |
|
Parental | VEKGRQDMRQLALRLAALFPDLFCRENYGRLRLITSSKHRCVDSSAAFLQGLWQHYHPGLPPPDVSDMEC |
| VEKGRQDMRQLALRLAALFPDLFC.E.YGRLRLITSSKH.CVDSSAAFLQGLWQHYHPGLPPPDVSDMEC |
Retrocopy | VEKGRQDMRQLALRLAALFPDLFCQEKYGRLRLITSSKHHCVDSSAAFLQGLWQHYHPGLPPPDVSDMEC |
|
Parental | DPPRVNDKLMRFFDHCEKFLTEVERNATALYHVEAFKTGPEMQTVLKKVAATLQVPVNNLNADLIQVAFF |
| DPPRVNDKLMRFFDHCEKFLTEVERNATALYHVEAFKTGPEMQTVLKKVAATLQVPVNNLNADLIQVAFF |
Retrocopy | DPPRVNDKLMRFFDHCEKFLTEVERNATALYHVEAFKTGPEMQTVLKKVAATLQVPVNNLNADLIQVAFF |
|
Parental | TCSFDLAIQGVHSPWCDVFDVDDAKVLEYLNDLKQYWKRSYGYAINSRSSCNLFQDIFLHLDKAVEQKQR |
| TCSFDLA.QGVHSPWCDVFDVDDAKVLEYLNDLKQYWKRSYGYAINSRSSCNLFQDIFLHLDKAVEQKQR |
Retrocopy | TCSFDLAVQGVHSPWCDVFDVDDAKVLEYLNDLKQYWKRSYGYAINSRSSCNLFQDIFLHLDKAVEQKQR |
|
Parental | SQPVSSPVILQFGHAETLLPLLSLMGYFKDKEPLTAYNFEEQVHREFRSGHIVPYASNLIFVLYHCEDAQ |
| SQPVSSPVILQFGH.ETLLPLLSLMGYFKDKEPLTAYNFEEQVHREFRSGHIVPYASNLIFVLYHCEDAQ |
Retrocopy | SQPVSSPVILQFGHEETLLPLLSLMGYFKDKEPLTAYNFEEQVHREFRSGHIVPYASNLIFVLYHCEDAQ |
|
Parental | TPQEKFQIQMLLNEKVLPLAHSQKTVALYEDLKNHYQDILQSCQTSKECNLPKVNITSDEL |
| TPQEKFQIQMLLNEKVLPLAHSQKTVALYEDLKNHYQDILQSCQTSKECNLPKVNITSDEL |
Retrocopy | TPQEKFQIQMLLNEKVLPLAHSQKTVALYEDLKNHYQDILQSCQTSKECNLPKVNITSDEL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .22 RPM |
12 .22 RPM |
SRP017611_kidney |
0 .07 RPM |
31 .19 RPM |
SRP017611_liver |
0 .13 RPM |
14 .86 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_32 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_32 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_32 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
7 retrocopies.