RetrogeneDB ID: | retro_rnor_357 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | 8:19889932..19890871(+) | ||
| Located in intron of: | ENSRNOG00000030753 | ||
Retrocopy information | Ensembl ID: | ENSRNOG00000029802 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSRNOG00000030753 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_rnor_357
ATGGAGCCACAAAACCAAACATTTGTGTTACAATTCCTTCTTCTAGGATTTACAGATGATGCAGAATTTCAGTCTCTCAT
CTTCAGCCTCTTCCTTTTCATATACTTAGTCACAATCCTCGGAAACCTGTTCATAATTCTAGGTATAGCCTTTGAATCCC
ACCTCCATACTCCAATGTACTTCTTCCTCTCCAATTTGTCCTTTAATGACATCAGTTTAAGCACAGCTACAGTCATCAAG
ATGCTGGTTAACATTCAAGCAAATGACCAGAGCATCACTTACACAGGCTGCCTCACACAGCTCTTCTTTGTACTTGCTTT
TGCATATTTTGAAAATTTTCTCCTTACAGTGATGGCCTATGATCGCTATGCAGCTATTTGTCACCCATTGAGGTATAATA
TCATAATGAATCCTAAGGTATGTGTTCTACTCTCATTAATTTCTCTGTTCATTAGTATTATGGATTCCCTGATGCATACT
CTCATGGTACAGAGGCTATCCTTCTGCAGAAATCTGGAAATCCCTCACTACTTCTGTGAACTTGATCAGGTCATCAAGCT
TTCCTGTTCTGACACCCTCATTGATAACATTGTACTCTTTGTAGCAACTTGTGTATTTGGTGGTGTTCCTCTTTGTGGAA
TCATTTATTCTTATTATCATATTGTGTCTGCAGTCTTGAAGATAGCATCATTGGAGGGAAAGTACAAAGCCTTCTCTACT
TGTGGAACTCACTTGTCAGTGGTTTCCCTATTTTATGGGGCTGGTTCTATGGTATATATCAGCTCTGCAATAAGTGCCTC
ACCAGGAAAATCTGCAGTGGCTTCAGTGATGTACTCTGTGGTTCCTCAAATGATGAACCCTTTTATCTACAGTTTAAGGA
ACAAGGACATGAAAGTTGCCATAAGAAATATTTTAAGCAAGACCATTTCACTTGAATAA
ORF - retro_rnor_357 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.35 % |
| Parental protein coverage: | 97.12 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | NQTTISEFILLGLSDDPALQPFIFTLFLSIYLITTLGNLLIILAVSFDSQLHTPMYFFLSNLSFNDICFS |
| NQT....F.LLG..DD...Q..IF.LFL.IYL.T.LGNL.IIL...F.S.LHTPMYFFLSNLSFNDI..S | |
| Retrocopy | NQTFVLQFLLLGFTDDAEFQSLIFSLFLFIYLVTILGNLFIILGIAFESHLHTPMYFFLSNLSFNDISLS |
| Parental | TTTVPKMLINLQKQSKAISYTGCVTQLSFVLLFAGMENCLLAVMAYDRYMAICHPLRYTVIMEPCFCVLL |
| T.TV.KML.N.Q.....I.YTGC.TQL.FVL.FA..EN.LL.VMAYDRY.AICHPLRY..IM.P..CVLL | |
| Retrocopy | TATVIKMLVNIQANDQSITYTGCLTQLFFVLAFAYFENFLLTVMAYDRYAAICHPLRYNIIMNPKVCVLL |
| Parental | ILLSLLISLVDSLMHSLMVLRLSFCRHLEIPNFFCELPKMLKLACSDTLIDNILIYISSCIFAGIPLSGI |
| .L.SL.IS..DSLMH.LMV.RLSFCR.LEIP..FCEL....KL.CSDTLIDNI......C.F.G.PL.GI | |
| Retrocopy | SLISLFISIMDSLMHTLMVQRLSFCRNLEIPHYFCELDQVIKLSCSDTLIDNIVLFVATCVFGGVPLCGI |
| Parental | VFSYIHIMSSIFRMPSSEGKHKAFTTCGSHLSVVSLFYGTGFGVYITSIIMDSSRKTAVASVMYSVVPQM |
| ..SY.HI.S......S.EGK.KAF.TCG.HLSVVSLFYG.G..VYI.S.I..S..K.AVASVMYSVVPQM | |
| Retrocopy | IYSYYHIVSAVLKIASLEGKYKAFSTCGTHLSVVSLFYGAGSMVYISSAISASPGKSAVASVMYSVVPQM |
| Parental | LNPFIYSLRNREMKDAMRKFFKK |
| .NPFIYSLRN..MK.A.R....K | |
| Retrocopy | MNPFIYSLRNKDMKVAIRNILSK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_357 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_357 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_357 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 6 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000030753 | 6 retrocopies |