RetrogeneDB ID: | retro_rnor_461 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:96080934..96081186(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000037364 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdc42se2 | ||
Ensembl ID: | ENSRNOG00000042449 | ||
Aliases: | Cdc42se2, RGD1563924 | ||
Description: | CDC42 small effector protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A1L1K4] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGM |
MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGM | |
Retrocopy | MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGM |
Parental | PANVQMQLVDTKAG |
PANVQMQLVDTKAG | |
Retrocopy | PANVQMQLVDTKAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .86 RPM | 91 .45 RPM |
SRP017611_kidney | 0 .07 RPM | 38 .31 RPM |
SRP017611_liver | 0 .20 RPM | 8 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008774 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005142 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000042449 | 2 retrocopies |
retro_rnor_461 , retro_rnor_696,
|