>retro_rnor_528
ATGGTCTCTAAGGACAGGGGTCAGAACTACGGGGAGGTCAGCATCCACCTCACTGTGCTTGTGCCTCCATCCAAGCCGAC
AGTCAATATCCCCTCCTCTGTCACCATTGGGAACAGGGCAGTGCTGACCTGCTCAGAACATGACGGTTCCCCTCCTTCTG
AGTATTCCTGGTTCAAGGATGGGGTACCTATGCTTATAGCAGACGCCAAGAAAACCTGTGCCTTCATCAATACATCTTCA
TACACCATCGATCCAAAATCAGGGGATCTGGTCTTTGACCCTGTGTCAGCCTTTGATAGTGGCGAATGCTACTGCCAGGC
ACAGAACGGGTATGCGACAGCCATGAGGTCAGAGGCTGTACGCATGGAGGCTGTGGAGCTGAATGTGGCGGGCATCATGG
CAGCTGTCCTGGTAATACTGATTCTCCTTGGACTCTTGATTTTTGGCATCTGGTTTGCCTATAGCCATGGATACTTTGAA
AGAACAAAGAAAGGGACTGCACCGGGTAAGAAGGTGATTTACAGCCAGCCCAGTGCTCGCAGTGAGGGGGAATTCAAACA
GACCTCGTCATTCCTGGTG
ORF - retro_rnor_528 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.26 % |
Parental protein coverage: |
64. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MVSEDGGQNYGEVSIHLTVLVPPSKPTVSIPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGVPMLTADAK |
| MVS.D.GQNYGEVSIHLTVLVPPSKPTV.IPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGVPML.ADAK |
Retrocopy | MVSKDRGQNYGEVSIHLTVLVPPSKPTVNIPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGVPMLIADAK |
|
Parental | KTRAFIN-SSYTIDPKSGDLVFDPVSAFDSGEYYCEAQNGYGTAMRSEAVRMEAVELNVGGIVAAVLVTL |
| KT.AFIN.SSYTIDPKSGDLVFDPVSAFDSGE.YC.AQNGY.TAMRSEAVRMEAVELNV.GI.AAVLV.L |
Retrocopy | KTCAFINTSSYTIDPKSGDLVFDPVSAFDSGECYCQAQNGYATAMRSEAVRMEAVELNVAGIMAAVLVIL |
|
Parental | ILLGLLIFGIWFAYSRGYFERTKKGTAPGKKVIYSQPSARSEGEFKQTSSFLV |
| ILLGLLIFGIWFAYS.GYFERTKKGTAPGKKVIYSQPSARSEGEFKQTSSFLV |
Retrocopy | ILLGLLIFGIWFAYSHGYFERTKKGTAPGKKVIYSQPSARSEGEFKQTSSFLV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
5 .97 RPM |
SRP017611_kidney |
0 .28 RPM |
109 .84 RPM |
SRP017611_liver |
0 .20 RPM |
98 .37 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_528 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_528 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_528 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.