>retro_rnor_586
ATGTTTTCTCCTGATTAAGAAAATCATCCTTCCAAAGCCCCAGTAAAATATGGCGAACTCATTGTCTTAGGGTATAATGG
GTCTCTCCCAAAGGGCGACAGAGGAAGGAGGAAAAGTAGGTTTGCTTTGTTTAAAAGACCTAAGGCAAATGGGGTGAAGC
CTAGCACCGTGCACATTGCATGCACTCCTCAGGCCGCCAAGGCAATAAGCAACAAGGACCAGCATAGCATATCGTAGACT
TTATCTCGAGCCCAGACAGTGGTGGTTGAATATACTCACGACAGCAACACTGATATGTTTCAGATTGGCCGGTCAACTGA
AAGTCCTATTGATTTTGTGGTAACTGACACAGTTCCTGGAAGTCAGAGTAATTCCGACACGCAGTCCGTACAAAGCACTA
TATCGAGGTTTGCCTGTAGGATCATTTGTGAACGTAATCCTCCCTTTACAGCTCGGATTTATGCTGCAGGATTTGATTCA
TCAAAAAACATCTTTCTTGGGGAGAAGGCTACCAAATGGAAGACGTCCGACGGGCAGATGGATGGCCTGACCACTAATGG
AGTTCTTGTGATGCATCCACGCGATGGGTTCACAGAAGACTCCAAGCCTGGAATATGGAGAGAGATATCCGTATGTGGGA
ACGTCTTCAGTCTGCGTGAAACCAGATCAGCGCAACAGAGAGGAAAGATGGTGGAAATCGAAACCAATCAGCTGCAAGAT
GGCTCCTTAATCGACCTCTGTGGTGCAACCCTGCTGTGGCGCACAGCAGAAGGCCTTTCCCACACCCCTACTGTGAAACA
CTTAGAAGCTCTGAGACAGGAGATCAATGCAGCTCGGCCTCAGTGCCCTGTAGGCTTCAACACACTAGCCTTCCCCAGCA
TGAAGAGGAAAGATGTTGTAGATGAGAAGCAACCATGGGTATATGTGAACTGCGGCCATGTTCATGGTTACCATAACTGG
GGAAACAAGGAAGAACGTGACGGCAAAGATCGTGAATGTCCTATGTGTAGGTCTGTTGGTCCCTATGTCCCTCTGTGGCT
TGGATGTGAAGCTGGATTTTATGTGGACGCCGGCCCTCCCACCCATGCCTTTAGCCCCTGTGGGCATGTGTGTTCAGAAA
AGACAACGGCTTACTGGTCCCAGATCCCGCTTCCTCATGGTACGCACACTTTTCACGCAGCCTGTCCCTTCTCTGCACAT
CAGTTGGCTGGTGAACAAGGCTATATCAGACTTATTTTCCAAGGACCTCTAGAC
ORF - retro_rnor_586 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.56 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MFSPDQENHPSKAPVKYGELIVLGYNGSLPNGDRGRRKSRFALFKRPKANGVKPSTVHIACTPQAAKAIS |
| MFSPD.ENHPSKAPVKYGELIVLGYNGSLP.GDRGRRKSRFALFKRPKANGVKPSTVHIACTPQAAKAIS |
Retrocopy | MFSPD*ENHPSKAPVKYGELIVLGYNGSLPKGDRGRRKSRFALFKRPKANGVKPSTVHIACTPQAAKAIS |
|
Parental | NKDQHSISYTLSRAQTVVVEYTHDSNTDMFQIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISRFACR |
| NKDQHSIS.TLSRAQTVVVEYTHDSNTDMFQIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISRFACR |
Retrocopy | NKDQHSIS*TLSRAQTVVVEYTHDSNTDMFQIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISRFACR |
|
Parental | IICERNPPFTARIYAAGFDSSKNIFLGEKAAKWKTSDGQMDGLTTNGVLVMHPRDGFTEDSKPGIWREIS |
| IICERNPPFTARIYAAGFDSSKNIFLGEKA.KWKTSDGQMDGLTTNGVLVMHPRDGFTEDSKPGIWREIS |
Retrocopy | IICERNPPFTARIYAAGFDSSKNIFLGEKATKWKTSDGQMDGLTTNGVLVMHPRDGFTEDSKPGIWREIS |
|
Parental | VCGNVFSLRETRSAQQRGKMVEIETNQLQDGSLIDLCGATLLWRTAEGLSHTPTVKHLEALRQEINAARP |
| VCGNVFSLRETRSAQQRGKMVEIETNQLQDGSLIDLCGATLLWRTAEGLSHTPTVKHLEALRQEINAARP |
Retrocopy | VCGNVFSLRETRSAQQRGKMVEIETNQLQDGSLIDLCGATLLWRTAEGLSHTPTVKHLEALRQEINAARP |
|
Parental | QCPVGFNTLAFPSMKRKDVVDEKQPWVYLNCGHVHGYHNWGNKEERDGKDRECPMCRSVGPYVPLWLGCE |
| QCPVGFNTLAFPSMKRKDVVDEKQPWVY.NCGHVHGYHNWGNKEERDGKDRECPMCRSVGPYVPLWLGCE |
Retrocopy | QCPVGFNTLAFPSMKRKDVVDEKQPWVYVNCGHVHGYHNWGNKEERDGKDRECPMCRSVGPYVPLWLGCE |
|
Parental | AGFYVDAGPPTHAFSPCGHVCSEKTTAYWSQIPLPHGTHTFHAACPFCAHQLAGEQGYIRLIFQGPLD |
| AGFYVDAGPPTHAFSPCGHVCSEKTTAYWSQIPLPHGTHTFHAACPF.AHQLAGEQGYIRLIFQGPLD |
Retrocopy | AGFYVDAGPPTHAFSPCGHVCSEKTTAYWSQIPLPHGTHTFHAACPFSAHQLAGEQGYIRLIFQGPLD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .29 RPM |
12 .94 RPM |
SRP017611_kidney |
0 .07 RPM |
9 .35 RPM |
SRP017611_liver |
0 .00 RPM |
5 .11 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_586 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_586 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_586 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.