>retro_rnor_709
ATGGAAAACCTTGGAGAGTCGCCCACGGACAAAGGCGGGGAGTCAGAGGAGTCGAGGGCTACTCCTGGGAACCCGTTAGC
GGCAGACACTGAGGGAATCCCTGAGGAAACCGATAGGGATGGAGACGTGGACTTGAAAGAAGCCGCGGCAGAGGAAAGGG
AGACCAAGAGTCAGGATGTCTCAGGTTTGACAGCAGTTGAGAGGGAAGACTCATTTCTTACTCCTGCAGCCAAAAAGCTG
AAACTAGAAACCAAAGACAAGAAGGAGAAGAAGCAGAAGGTGGACGAAGATGAGATTCAGAAGATGCAAATCCTGGTCTC
TTCTTTTTCTGAAGAGCAGCTGAACCGTTATGAAATGTATCGCCGGTCAGCTTTCCCGAAGGCAGCCATTAAAAGGCTGA
TCCAGTCCATCACTGGCACCTCTGTGTCTCAGAATGTTGTGATCGCCATGTCTGGCATTTCTAAAGTTTTTGTCGGGGAG
GTGGTAGAAGAAGCCCTGGATGTGTGTGAGAAATGGGGAGAAATGCCACCCCTGCAGCCCAAGCACATGAGGGAGGCCGT
GCGGAGGTTGAAGTCCAAGGGGCAAATCCCCAGCTCAAAGCACAAGAAAATCACCTTCTTC
ORF - retro_rnor_709 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.57 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MDNLGESPTDKAGEPGESEETRATPGAPVSADTEGIPEETDQVGDADSKEAAAEESELKSQDVSDVTAAE |
| M.NLGESPTDK....GESEE.RATPG.P..ADTEGIPEETD..GD.D.KEAAAEE.E.KSQDVS..TA.E |
Retrocopy | MENLGESPTDKG---GESEESRATPGNPLAADTEGIPEETDRDGDVDLKEAAAEERETKSQDVSGLTAVE |
|
Parental | REDPSLLTPAAKKLKLDTKDKKEKKQKVDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS |
| RED.S.LTPAAKKLKL.TKDKKEKKQKVDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS |
Retrocopy | RED-SFLTPAAKKLKLETKDKKEKKQKVDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS |
|
Parental | ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKITF |
| ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP.SKHKKITF |
Retrocopy | ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPSSKHKKITF |
|
Parental | F |
| F |
Retrocopy | F |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
1 .08 RPM |
9 .99 RPM |
SRP017611_kidney |
3 .77 RPM |
12 .49 RPM |
SRP017611_liver |
1 .82 RPM |
5 .45 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_709 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_709 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_709 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.