>retro_rnor_782
GGTCGCAAGAAGCAGAGCCGGGTCACCGAACAGGACAGGGCCATCCTGCAACTGAAGCAGCAGAGAGACAAGCTGAGGCA
GTACCAGAAGAGGGTCACGCAGCAGCTGGAGAGGGAAGGGGTTTGGCCAGGCAGCTGCTTCGGGATGGCAGGAAAGAACA
GGCCAAGCTGCTACTCAAGAAGAAGAGGTACCGGGAGCAACTGCTCGATAGGACAGAAAACCAGATCAGCAGCCTGGAAG
CCATGGTTCAGAGCATTGAGTTCATGCAGATCGAGATGAAGGTGATGGAGGGGCTTCAGGTGGGGAACGAATGTCTGAAT
AAGATGCACCAGGTGATGTCCATAGAGGAGGTGGAGAGGATCCTGGACGAGACCCAGGAGGCCGTGGAGTACCAGCGGCA
AATTGATGAGCTGCTGGCAGGAAGTTTCACCCAGGAGGACGAGGATGCCATCCTGGAAGAGCTGAATGCAATCACTCAGG
AACAAATCGAGTTACCAGAGGTTCCTTCAGAGTCCCTGCCTGACACAAGCCCAGAAGCCCCTGCCAAGGCCAGATCCAGG
CAGGCAGAGCTGGTGGCCGCTTCG
ORF - retro_rnor_782 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.45 % |
Parental protein coverage: |
97.5 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | GRKKQSRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERE-RALARQLLRDGRKERAKLLLKKKRYREQLL |
| GRKKQSRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERE.R.LARQLLRDGRKE.AKLLLKKKRYREQLL |
Retrocopy | GRKKQSRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERE<RGLARQLLRDGRKEQAKLLLKKKRYREQLL |
|
Parental | DRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELL |
| DRTENQISSLEAMVQSIEF.QIEMKVMEGLQVGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELL |
Retrocopy | DRTENQISSLEAMVQSIEFMQIEMKVMEGLQVGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELL |
|
Parental | AGSFTQEDEDAILEELNAITQEQIELPEVPSEPLPDTSPEAPAKARSRQAELVAAS |
| AGSFTQEDEDAILEELNAITQEQIELPEVPSE.LPDTSPEAPAKARSRQAELVAAS |
Retrocopy | AGSFTQEDEDAILEELNAITQEQIELPEVPSESLPDTSPEAPAKARSRQAELVAAS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
19 .99 RPM |
SRP017611_kidney |
0 .07 RPM |
22 .75 RPM |
SRP017611_liver |
0 .00 RPM |
7 .26 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_782 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_782 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_782 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.