>retro_rnor_822
ATGTGGGTGTTTGGTTATGGATCCCTCATTCGGAAGGTGGACTTCCCCTACCAAGACAAGCTGGTTGGTTACATCACAAA
CTACAGCCGGCGCTTCTGGCAAGGCAGCACCGACCACCGCGGGGTCCCCAGCAAGCCTGTAAGAGTTGTGACCTTGTTGA
ATATCCTGGGGGGAATGTATGAGGTGTTGCTTACAAACTACCCGTAGGAAAAGAAGAAGAAGTAAAAACATATCTTGACT
TCAGAGAGAAAGGAGGCTACAGAACTACGACAGTCATTTTTTATCCAAAAGATTCCACAAAACTATTCAGTGTTTTGCTC
TACGTTGGAACATGTGATAATCCTAACTATCTTGGACCTGCACCTCTGGAAGACATTGCTGAACAAATTTTTAACGCAGC
TGGTCCAAGTGGAAGAAATATAGACTATTTTTTTGAACTTGCAGATTCTATTAGGAAACTTGTGTCAAAAGATGCAGACG
AGCATTTCTTCTCTTTGGAAAAATTAGTAAAGGAACACTTAGAAGGAAAA
ORF - retro_rnor_822 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.5 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTL-VEDPGGSVWGVAYKLPV |
| MWVFGYGSLI.KVDFPYQDKLVGYITNYSRRFWQGSTDHRGVP.KP.RVVTL.VE.PGG.V.GVAYKLPV |
Retrocopy | MWVFGYGSLIRKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPSKPVRVVTL<VEYPGGNV*GVAYKLPV |
|
Parental | GKEEEVKTYLDFREKGGYRTTTVIFYPKDSTTKPFSVLLYIGTCDNPNYLGPAPLEDIAEQIFNAAGPSG |
| GKEEEVKTYLDFREKGGYRTTTVIFYPKDST.K.FSVLLY.GTCDNPNYLGPAPLEDIAEQIFNAAGPSG |
Retrocopy | GKEEEVKTYLDFREKGGYRTTTVIFYPKDST-KLFSVLLYVGTCDNPNYLGPAPLEDIAEQIFNAAGPSG |
|
Parental | RNTEYLFELADSIRKLVPEDADEHLFSLEKLVKERLEGK |
| RN..Y.FELADSIRKLV..DADEH.FSLEKLVKE.LEGK |
Retrocopy | RNIDYFFELADSIRKLVSKDADEHFFSLEKLVKEHLEGK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .07 RPM |
2 .80 RPM |
SRP017611_kidney |
0 .00 RPM |
4 .54 RPM |
SRP017611_liver |
0 .00 RPM |
7 .80 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_822 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_822 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_822 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.