>retro_rnor_838
ATGGCACGGCCAGCGTGGCTGGGCGAGCTGTTGGTGCTGCTGCTTTTTGCCGCCTCCCTGGACCAAGTTGCCCTGGCCAC
AGAAGTTCAGCCACCTGTAACGAATTTGAGTGTCTCTGTCGAAAATCTCTGCACAATAGTGTGGACATGGAGTCCTCCTG
AGGGAGCCAGTCCAAATTGCAGTCTCAGATATTTTAGTCATTTTGATGACCAACAGGATAAGAAAATTGCTCCTGAAACT
CGTCGTAAAAAGGAATTACCCCTAAATGAGAAAATCTGTCTGCAAGTGGGGTCCCAGTGTAGCACCAATGAAAGTGAGAA
GCCTAGCCCTTTGGTGAAAAAGTGCATCTCACCCCCCGAAGGGGATCCTGAGTCTGCTGTGACCGAACTGCAGTGCATTT
GGCACAACCTGAGCTATATGAAGTGTTCCTGGCTCCCTGGAAAGAATACAAGCCCGGACACCAACTATACTCTTTACTAT
TGGTACAGCAGCCTGGGGAAAAGTCTTCAATGTGAAAACATCCACAGAGAAGGTCAACACATTGGTTGTTCCTTTAAATT
GACTAAAGTGGAATCTAATTATGAACATCATAACATTCAGATAATGGTCAAGGATAATGCTGGGAAAATTAGGCCATCCT
ACAAAATAGTGTCCTTCACTTCCAATGTGAAACCCGGTCCTCCACATATTAAACATCTTTTCCTCAAAAATGGTGCCTTA
TTCGTGCAGTGGAAGAACCCACAGAATTTCAGTAGCAGATGTTTGTCTTATGAAGTAGAAGTCAATAGCACTCAAACTGA
CAGCTATAATTCTAACTCTTTAGAGGTTGAAGAGGACAAATGCCAGAATTCTGAATTTGATAGAAACATGGAGGGTGCAA
GTTGTTTCATATCTCCCGGTGTTCTTGCCAACACTGTCTACACAGTCAGAGTAAGAGTCAAAACAAACAAGTTATGCTTT
GATGACAACGACCTGTGGAGTAATTGGAGCGAAGCGCTGAGTATAGGTAAGGAGCCGAATTCCACCTTCTACACCACCAT
GTTACTCATCATTCCAGTCTTTGTCGCAGTGGTAATCATAATTCTCCTTTTTTACCTGAAAAGGCTTAAGATCATTATAT
TTCCTCCAATTCCTGATCCTGGCAAGATTTTTAAAGAAATGTTTGGAGACCAGAATGATGATACCCTGCACTGGAAAAAG
TATGACATCTATGAGAAACAATCGAAAGAAGAAACCGACTCTGTAGTGCTGATAGAAAACCTGAAGAAAGCGGCTCCA
ORF - retro_rnor_838 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
100. % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MARPAWLGELLVLLLFAASLDQVALATEVQPPVTNLSVSVENLCTIVWTWSPPEGASPNCSLRYFSHFDD |
| MARPAWLGELLVLLLFAASLDQVALATEVQPPVTNLSVSVENLCTIVWTWSPPEGASPNCSLRYFSHFDD |
Retrocopy | MARPAWLGELLVLLLFAASLDQVALATEVQPPVTNLSVSVENLCTIVWTWSPPEGASPNCSLRYFSHFDD |
|
Parental | QQDKKIAPETRRKKELPLNEKICLQVGSQCSTNESEKPSPLVKKCISPPEGDPESAVTELQCIWHNLSYM |
| QQDKKIAPETRRKKELPLNEKICLQVGSQCSTNESEKPSPLVKKCISPPEGDPESAVTELQCIWHNLSYM |
Retrocopy | QQDKKIAPETRRKKELPLNEKICLQVGSQCSTNESEKPSPLVKKCISPPEGDPESAVTELQCIWHNLSYM |
|
Parental | KCSWLPGKNTSPDTNYTLYYWYSSLGKSLQCENIHREGQHIGCSFKLTKVESNYEHHNIQIMVKDNAGKI |
| KCSWLPGKNTSPDTNYTLYYWYSSLGKSLQCENIHREGQHIGCSFKLTKVESNYEHHNIQIMVKDNAGKI |
Retrocopy | KCSWLPGKNTSPDTNYTLYYWYSSLGKSLQCENIHREGQHIGCSFKLTKVESNYEHHNIQIMVKDNAGKI |
|
Parental | RPSYKIVSFTSNVKPGPPHIKHLFLKNGALFVQWKNPQNFSSRCLSYEVEVNSTQTDSYNSNSLEVEEDK |
| RPSYKIVSFTSNVKPGPPHIKHLFLKNGALFVQWKNPQNFSSRCLSYEVEVNSTQTDSYNSNSLEVEEDK |
Retrocopy | RPSYKIVSFTSNVKPGPPHIKHLFLKNGALFVQWKNPQNFSSRCLSYEVEVNSTQTDSYNSNSLEVEEDK |
|
Parental | CQNSEFDRNMEGASCFISPGVLANTVYTVRVRVKTNKLCFDDNDLWSNWSEALSIGKEPNSTFYTTMLLI |
| CQNSEFDRNMEGASCFISPGVLANTVYTVRVRVKTNKLCFDDNDLWSNWSEALSIGKEPNSTFYTTMLLI |
Retrocopy | CQNSEFDRNMEGASCFISPGVLANTVYTVRVRVKTNKLCFDDNDLWSNWSEALSIGKEPNSTFYTTMLLI |
|
Parental | IPVFVAVVIIILLFYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHWKKYDIYEKQSKEETDSVVLIEN |
| IPVFVAVVIIILLFYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHWKKYDIYEKQSKEETDSVVLIEN |
Retrocopy | IPVFVAVVIIILLFYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHWKKYDIYEKQSKEETDSVVLIEN |
|
Parental | LKKAAP |
| LKKAAP |
Retrocopy | LKKAAP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .14 RPM |
0 .50 RPM |
SRP017611_kidney |
0 .07 RPM |
4 .54 RPM |
SRP017611_liver |
0 .34 RPM |
4 .50 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_838 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_838 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_838 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.