RetrogeneDB ID: | retro_sara_466 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | scaffold_218018:810..1425(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TRMT61B | ||
| Ensembl ID: | ENSSARG00000000247 | ||
| Aliases: | None | ||
| Description: | tRNA methyltransferase 61 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:26070] |
Retrocopy-Parental alignment summary:
>retro_sara_466
GGGGGCACGCGGAATGGGCCCCCGCGGGAGAGCTTGCGGAGCCGGGCGGGGGAGCTGGTCCTGGCCAAGACGGGCGGAGG
AAGACCCCGCTATCAGAAGCTGTTCAGGCTGAGCCCCAACGGGCACTTCAACAGCAGCTGGGGGACCGTCTGGCACCGCG
ACGTGCTGGGCTGCTGCCGGCCAGGTGGTGCGCAGCTCGCGGGCAGGGAGCACCTGCTGCAGAGGCCGATGCTGGAGGAC
TACGTGCTGCTGATGAGGAGGGGACCTGCCATCACGTACCCGAAGGATGTGAGTATGTTGCTATTGATGACGGCCATCCA
CCCAGGTGATACCGTCTTGGAAGCTGGCTCCGGTTCTGGTGGAACCAGCCTGTTTTTGTCCAGAGCAGTTGGACCACAAG
GAAGAGTTAAAAGTTTTGAAATACGGAAAGATCACCATGAATTGGCTAAGAAGAATTACAGACATTGGCGTGATTCATGG
AAGATAAGTCATGCAGAAGAGTGGCCAGATAATGTGGAATTTATTCATAAGGATATTTCCAGAGCAACGCAGGACATCTA
ATCCTTAATATTTGATGTTTTTTTAGAAGCACTCCTTGATTTAAAGAAAGCACTT
ORF - retro_sara_466 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.38 % |
| Parental protein coverage: | 57.06 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | GGRARGAGRGDAPFRPGELVLAETGRRETRYQRLFRLSPDGHFNSSWGTVWHRDVL-GRLP-GQVVRSS- |
| GG...G..R.....R.GELVLA.TG....RYQ.LFRLSP.GHFNSSWGTVWHRDVL.G.LP.GQVVRSS. | |
| Retrocopy | GGTRNGPPRESLRSRAGELVLAKTGGGRPRYQKLFRLSPNGHFNSSWGTVWHRDVL<GLLP<GQVVRSS< |
| Parental | AGREHLLRRPTLEDYVLLMRRGPAITYPKDVSMLLLMMDIHPGDTVLEAGSGSGGMSLFLSKAVGPKGRV |
| AGREHLL.RP.LEDYVLLMRRGPAITYPKDVSMLLLM..IHPGDTVLEAGSGSGG.SLFLS.AVGP.GRV | |
| Retrocopy | AGREHLLQRPMLEDYVLLMRRGPAITYPKDVSMLLLMTAIHPGDTVLEAGSGSGGTSLFLSRAVGPQGRV |
| Parental | ISFEIRKDHHELAKKNYRHWRDSWKISHAEEWPDNVEFIHKDISRATQDIKSLIFDAVALDMLNPQVAL |
| .SFEIRKDHHELAKKNYRHWRDSWKISHAEEWPDNVEFIHKDISRATQDI.SLIFD......L....AL | |
| Retrocopy | KSFEIRKDHHELAKKNYRHWRDSWKISHAEEWPDNVEFIHKDISRATQDI*SLIFDVFLEALLDLKKAL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_466 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000000247 | 1 retrocopy |
retro_sara_466 ,
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