>retro_sara_55
CATAAAGATGCCTATCAAGTGATCCTGGATGGTGTGAAAGGTGGTACTAAGCAGAAAAGATTAGCAGCTCAGTTTATTCC
AAACTTCTTTAAGCATTTTCCAGAACTGGCCGATTCTGCTGTCAGTGCCCAGTTAGACCTCTGTGAGGATGAAGATGTGT
CTATTCGACGGCAAGCAACTAAGGAATTGCCTCAATTTGCCACTGGAGAAAATCTTCCCCGGGTGGCTGATATACTAACC
CAACTTTTACAAACAGATGACTAGGCAGAATTTAACTTAGTGAACAATGCCCTGTTAAGTATATTTAAGATGGATGCAAA
AGGGACTTTAGGTGGCTTGTTTAGCCAAATTCTTTAGGGAGAGGGGACATTGTTAGAGAACGAGCAATCAAATTTCTTTC
TACAAAACTTAAAACTTTACCAGATGAAGTCTTAACAAAGGAACTGAAGAACTTATCCTGACTGAATCTTAAAAGGTTCT
AGAAGATGTGACTGGTGAAGAATTTGTTCTTTTCATGAAGATCCTGTCTGGGTTGAAAAGCCTCCAGACCATGAGTGGAA
GCAGCAGCTTGTAGAGTTGGTGGCTGAGCAGGCCGTCTTAGAACAAACCTTCAGTCCCTCAGACCTGACTGTGTGGACAG
ACTCCTGCAGTGCACGCGACAGGCAGTTCCTCTTTTTTTCTAAAAATGTGCATTCCACAAAGTTTTTGACTTATTTCTGT
GAGCACGTTCTTCCTAACCTCAGTCCCTTGACTACCCCAGTGGAGGGTCTTGATATACAGTTGGAGGTATTGAAACTATT
GGCGGAGATGAGCTCATTTTGTGGAGACATGGAAAAACTAGGAACAAACTTAAGGAAACTCTTTGATAAGTTATTGGAGT
ACATGTCTCTTCCTCCAGAGGAAGCAGAAAATGGGGAAAATGCGTGCAACGAGGAACCCAAGCTGCAGTTCAGTTACGTT
GAGTGTTTGTTGTACAGCTTCCACCAGTTGGGACGGAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAACT
CAAAGATTTCAAAATC
ORF - retro_sara_55 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.66 % |
Parental protein coverage: |
70.82 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | HKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGE |
| HKDAYQVILDGVKGGTK.KRLAAQFIP.FFKHFPELADSA..AQLDLCEDEDVSIRRQA.KELPQFATGE |
Retrocopy | HKDAYQVILDGVKGGTKQKRLAAQFIPNFFKHFPELADSAVSAQLDLCEDEDVSIRRQATKELPQFATGE |
|
Parental | NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGE-DIVRERAIKFLSTKLK-T |
| NLPRVADILTQLLQTDD.AEFNLVNNALLSIFKMDAKGTLGGLFSQIL.GE..........F....LK.T |
Retrocopy | NLPRVADILTQLLQTDD*AEFNLVNNALLSIFKMDAKGTLGGLFSQIL*GEGTLLENEQSNFFLQNLK<T |
|
Parental | LPDEVLTKEV-EELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSG-RQQLVELVAEQADLEQTFNP |
| LPDEVLTKE..EELILTES.KVLEDVTGEEFVLFMKILSGLKSLQT.SG..QQLVELVAEQA.LEQTF.P |
Retrocopy | LPDEVLTKEL<EELILTES*KVLEDVTGEEFVLFMKILSGLKSLQTMSG<KQQLVELVAEQAVLEQTFSP |
|
Parental | SD-PDCVDRLLQCTRQAVPL-FSKNVHSTKFVTYFCEHVLPNLSSLTTPVEGLDIQLEVLKLLAEMSSFC |
| SD.PDCVDRLLQCTRQAVPL.FSKNVHSTKF.TYFCEHVLPNLS.LTTPVEGLDIQLEVLKLLAEMSSFC |
Retrocopy | SD<PDCVDRLLQCTRQAVPL>FSKNVHSTKFLTYFCEHVLPNLSPLTTPVEGLDIQLEVLKLLAEMSSFC |
|
Parental | GDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNA |
| GDMEKL.TNLRKLFDKLLEYM.LPPEEAENGENA.NEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNA |
Retrocopy | GDMEKLGTNLRKLFDKLLEYMSLPPEEAENGENACNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNA |
|
Parental | EKLKDFKI |
| EKLKDFKI |
Retrocopy | EKLKDFKI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_55 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.