RetrogeneDB ID: retro_sara_603

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_237366:45166..45558(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000007984
• Aliases: None
• Description: None

Sequence

>retro_sara_603
GAATCTGGAAAACCAGGGGCTCATGTAACTGTGAAGAAGCTATTCTTTGGTGGGATTAAAGAAGATACTAGGAACATCAT
TTTAGAGATTACTTTGAGGAATATGGGAAAATCGATACTATTGAAATAATTACGGATAGGCAGTCTGGAAAGAAAAGAGG
CTTTGGATTTGTTACTTTTTATGACCATGATCCTGTGGATAAGATTGTATTACAGAAATACCATACCATTAACGGTCATA
ATGCAGAAGTACGAAAGGCTTTGTCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGAAGTGGGAGAGGAGGCAACTTT
GGCTTTGGGGATTCTCCTGGTGGTGGAGGAAATTTTGGACCAGGACCTGGAAGTAATTTCAGAGGAGGATCT

Alignment

ORF - retro_sara_603 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.45 %
• Parental protein coverage: 51.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ESGKPGAHVTVKKLFVGGIKEDTE-EHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI
          ESGKPGAHVTVKKLF.GGIKEDT..EHH.RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF.DHDPVDKI
Retrocopy ESGKPGAHVTVKKLFFGGIKEDTR<EHHFRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFYDHDPVDKI

Parental  VLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS
          VLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDS.GGGGNFGPGPGSNFRGGS
Retrocopy VLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSPGGGGNFGPGPGSNFRGGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_603 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000007984	1 retrocopy	retro_sara_603 ,