RetrogeneDB ID: retro_sara_618

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_242044:45023..45353(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASRGL1
• Ensembl ID: ENSSARG00000012493
• Aliases: None
• Description: asparaginase like 1 [Source:HGNC Symbol;Acc:16448]

Sequence

>retro_sara_618
TTGGTGGTCCTGGAGAACAACCCTGAGTTCAACGCAGGTTGTAACTCTGTATTGAACTCAATTGGTGAGTTTGAAATGGA
TGAGAGCATCATGGACGGGAAAGACCTGTCGCCGGGAGCTGTGTCCTCCATCTGCTGCATCACAAACCCCATCAAACTGG
CCCGGCTGGTGATGGAGAAGACATCTCATTGCTTTCTGACTGACCATGGCACAGCAAGATTTTCAGCCTCCATGGGGATT
ACACAGGTTTCCAGAGAGCACCTAGTGACGGAGAGAAACTAAAGACACCTGGAAAAAGAGAAAAAAGGCCAACAGAAGAC
AGACTGCGAG

Alignment

ORF - retro_sara_618 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.91 %
• Parental protein coverage: 68.32 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VVVLENDPEFNAGCGSVLNTIGEVEMDASIMDGKDLSAGAVSAVRCIANPIKLARLVMEKTAHCFLPGQG
          .VVLEN.PEFNAGC.SVLN.IGE.EMD.SIMDGKDLS.GAVS...CI.NPIKLARLVMEKT.HCFL...G
Retrocopy LVVLENNPEFNAGCNSVLNSIGEFEMDESIMDGKDLSPGAVSSICCITNPIKLARLVMEKTSHCFLTDHG

Parental  TARFAASTGTAQVSREHLVTERNLRHLEKEKRGQQKTDCE
          TARF.AS.G..QVSREHLVTERN.RHLEKEK.GQQKTDCE
Retrocopy TARFSASMGITQVSREHLVTERN*RHLEKEKKGQQKTDCE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_618 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000012493	1 retrocopy	retro_sara_618 ,