RetrogeneDB ID: retro_sara_654

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_253649:9133..9574(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EXOSC5
• Ensembl ID: ENSSARG00000010083
• Aliases: None
• Description: exosome component 5 [Source:HGNC Symbol;Acc:24662]

Sequence

>retro_sara_654
GTAGCGGAGAAGAGTCGGGAGAGACTCATCAGGAACACATGTGAAGCTGTGGTCCTGGGGGCCCTGCATACCCGAACCTC
CATCACTGTAGTGCTGCAGGTCATCAGTGACACTGGCTCTCTCCTGGCCTGCTGCCTGAATGCCACCTGCATGGCCTTGG
TGGATGCGGGGGTGCCCATGAGGGCCCTCTTCTGTGGGGTCACCTGTGCCCTGAAGTCTGATGGGACCCTAGTGCTGAAC
CCCACAGCCCGGCAAGAGCAGGAGGCCCGCGCAGTCCTGACCTTCGCCCTGGACAGCATGGAGTGCAAGCTGCTCATGTC
CAGCACCAAGGGCCTCTACACTGATGCCAAGCTCCAGCAGTGTCTGGCCGTGGCCCAGGCAGCCACCCACCACATCTTCC
ACTTCTACCGGGACTCACTGCAGAGACGTTACTCCAAGAGC

Alignment

ORF - retro_sara_654 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.52 %
• Parental protein coverage: 63.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNATCMALVDAGVPMRALFCGVTCA
          VAEKSRERLIRNTCEAVVLGALH.RTSITVVLQVISD.GSLLACCLNATCMALVDAGVPMRALFCGVTCA
Retrocopy VAEKSRERLIRNTCEAVVLGALHTRTSITVVLQVISDTGSLLACCLNATCMALVDAGVPMRALFCGVTCA

Parental  LKSDGTLVLDPTARQEQEARAVLTFALDSVDRKLLMSNTKGLYTDAELQQCLAAAQAAPHHIFRFYRDSL
          LKSDGTLVL.PTARQEQEARAVLTFALDS...KLLMS.TKGLYTDA.LQQCLA.AQAA.HHIF.FYRDSL
Retrocopy LKSDGTLVLNPTARQEQEARAVLTFALDSMECKLLMSSTKGLYTDAKLQQCLAVAQAATHHIFHFYRDSL

Parental  QRRYSKS
          QRRYSKS
Retrocopy QRRYSKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_654 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000009358	1 retrocopy	retro_etel_1393,
Sorex araneus	ENSSARG00000010083	1 retrocopy	retro_sara_654 ,