RetrogeneDB ID: | retro_sara_746 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_65096:3648..4147(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIN28B | ||
Ensembl ID: | ENSSARG00000008374 | ||
Aliases: | None | ||
Description: | lin-28 homolog B (C. elegans) [Source:HGNC Symbol;Acc:32207] |
Percent Identity: | 58.24 % |
Parental protein coverage: | 66.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GHCKWFNVRMGFGFISMINREGRPLDIP-VDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKG-LESIRV |
G.CK..NVRMGFGF.SM....G..LD.P.VDVFV.QSKL.MEGFR.LKEGE.VEFT.KKS.K..LESIRV | |
Retrocopy | GICKRSNVRMGFGFLSMTALAGVALDPP>VDVFVYQSKLHMEGFRRLKEGEAVEFTSKKSAKA>LESIRV |
Parental | TGPGGSPCVGSERRPKGKTLQKRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIS-HMVANCPHKT |
TGPGG..C.GSERRPKGK..QKR..KGDRC....GLDHHAKEC.LPPQPK...Y....S.H.....P... | |
Retrocopy | TGPGGVFCIGSERRPKGKNMQKRRSKGDRCPH-DGLDHHAKECKLPPQPKHQPYGSLLS<H*RPSKPPAP |
Parental | GAQPPATSQGRQEAESQPCTSTHPREVVGG |
....P............PC......E.VGG | |
Retrocopy | RGSLPTSGRKKRRSIPLPCCLRPKIEPVGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000015340 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002297 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017850 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011042 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008374 | 2 retrocopies |
retro_sara_121, retro_sara_746 ,
|
Tarsius syrichta | ENSTSYG00000006480 | 1 retrocopy |