>retro_sbic_1
ATGACGACGGCGACGACGACTAAGCCGGCGGCGGAACGCAGCGGGCGGCGCTACGCGCTGCTGCTGGCGCTCTGGGACTC
GGAGTACGCCAAGGAGGTGTACGGCGGGTACTACACCGTCTTCGTCTCCGCGTTCGGCGACGGCGCCAGCGGTGGCACCG
ACGAGAGGTGGGACTCCTTCCGCGTGATCGCCGGCGAGTTCCCGGCGCCGGAGGACCTGGCGTCGTACGACGGCTTCGTG
GTGAGCGGCAGCCCGCACGACGCGCACGGCGACGAGCCGTGGATCCGGCGCCTCTGCGCGCTCGTCCAGACCGTCCACGC
CATGAGGAAGCGTGTGCTCGGCGTCTGCTTCGGGCACCAGGTCCTGTGCCGAGCGCTGGGCGGAAGGGTCGGCAGGGCAC
GGAACGGCTGGGACGTCGGGGTGAGGAAGGTGACGTTTGCGCCGGACCTCCTGGAGGGCCGCCTCGAGTTCCTCATCGGG
GATCTCGTCGCCGATGAGCTTCCGGCCCAGAGCGCCGGCCTCATCGAGGTTCACCAGGACGAGGTGTGGGAGATCCCGCC
GGCGGCGACGGTGCTGGCCTACTCGGAGAAGACGCGCGTGGAGGTGTTCGCGGTCGGGGAGCACGCGCTGGGCATCCAGG
GACACCCGGAGTACACCGTCGACATCCTCCACAACCTCATCGACCGCCTCACCGGCCAGAAGGCCATCCGGAGGAGCGTC
GGCGAGGAGGCACGGCGGACGGTCGCGGAGACCGGCGGGCCGGACCGCGCGTTCTGGACGGCGCTCTGCAAGGGTTTTCT
CCGGGGCGGAGGAGATCGTACGCAGCCTGCTCTGCCGGCGATGCGGGAGACGACGGCGGCGCCGGAGGTGACCAGCTGCG
CCGTCGCTGGCTGCGGCTTCACCAGCGCAGGCGCAGCTGCAATGATCCAGTTGGCTCGCAGCAACTA
ORF - retro_sbic_1 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.56 % |
Parental protein coverage: |
82.09 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AFGDAGETWDLYRAIDGELPAPDEVQCYDGFVISGSPHDAYADDLWILRLCRLVRALHGMRKRVLGVCFG |
| A.G...E.WD..R.I.GE.PAP.....YDGFV.SGSPHDA..D..WI.RLC.LV...H.MRKRVLGVCFG |
Retrocopy | ASGGTDERWDSFRVIAGEFPAPEDLASYDGFVVSGSPHDAHGDEPWIRRLCALVQTVHAMRKRVLGVCFG |
|
Parental | HQVICRALGGRVGKARAGWDVGVREVAIAEAPAPALPPRRFLDALRECDQLPPR-AKITEVHQDEVWEVP |
| HQV.CRALGGRVG.AR.GWDVGVR.V....AP........FL......D.LP...A...EVHQDEVWE.P |
Retrocopy | HQVLCRALGGRVGRARNGWDVGVRKVTF--APDLLEGRLEFLIGDLVADELPAQSAGLIEVHQDEVWEIP |
|
Parental | EGAEVLASSDKTGVEMFCVGEHMLGIQGHPEYTKDILLSLVDRLLAAGSITIPFAEAVKWQV-ETTAPDR |
| ..A.VLA.S.KT.VE.F.VGEH.LGIQGHPEYT.DIL..L.DRL.....I.....E.....V.ET..PDR |
Retrocopy | PAATVLAYSEKTRVEVFAVGEHALGIQGHPEYTVDILHNLIDRLTGQKAIRRSVGEEARRTVAETGGPDR |
|
Parental | EFWLKLCKSFLK |
| .FW..LCK.FL. |
Retrocopy | AFWTALCKGFLR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_1 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.