>retro_sbic_13
ATGGAGGACTACGACTACGAGCCGCCGTTGATGGCCACGTACAGGCATCTCTTGGACAGTCACCCGCACCGACTGGACGT
CGTCGATCATCGGAGCGGCGCCGACGACGACGAGGAGGGCTTCCTCCTCCCGGTGATCGACCTTTCCAGCCTGCTGGAGC
AGTCATCATCAGGCGCCGAGGCAGCAGCAGAGCAGTGCCGGGCGTCCATCGTGCGCGCCGCCTCGGAGTGGGGCTTCTTC
CAGGTGACCAACCACGGCGTGCCGCAGGCGCTGCTGGACGAGCTGCACCAGGCGCAGGTCGCCGTCTTCCGCCGGCCCTT
CCACCTCAAGGCGAGCCAGCCGCTGCTGGACTTCTCGCCGGAGAGCTACCGCTGGGGCACACCCACCGCAACGTGCCTCG
ACCAACTCTCGTGGTCCGAGGCCTACCACATCCCCACGACCAATACGACGGCGGCGGCTGACGACAAGACCAGGCTCGTG
GTGGAGGAGGTGTCCACGGCGATGTCGAAGCTGGCGCAGCGGCTGGCAGGGATCCTCGTCGCAGACCTGCTGCTGGGCGA
CAGTAGCATCGGCGACGGCGAGGACGACGACACGGCAGCGGCGGTGGTGTCGCGGTGCACGCGGAGCACCTGCTTCCTAA
GGCTGAACCGGTACCCGCCGTGCCCGGCGCCCAGCGGCGCCTACGGGCTGTGCCCGCACACGGACAGCGACTTCCTCACC
ATCCTGCACCAGGACGGCGTCGGCGGCCTCCAGCTCGTCAAGGCCGGGCGGTGGGTCGCCGTCAAGCCCAACCCCGGCGC
GCTCATCGTCAACGTGGGCGACCTCCTGCAGGCGTGGAGCAACGACCGGTACCGGAGCGTCGAGCACCGGGTCATGGCCA
GCGACGCGCGGGAGCGGTTCTCCGTCGCCTTCTTCCTCTGCCCCAGCTACGACACGCTCGTCCGGCCACGCTGCGGCGCC
GGCGGACCTCCTCGCTACGAGAGCTTCACCTTCGGGGAGTACCGGAACCAGATCAGGGAGGACGTCAGGCTCACGGGCCG
AAAGCTCGGCCTGCAACGCTTTCGCAAACCAGAGTAA
ORF - retro_sbic_13 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.04 % |
Parental protein coverage: |
86.43 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LPLIDLSCLQQRSGGGGGSARAACADAMARAASEWGFFQVTGHGVSRALLERLRAEQARLFRLPFETKAK |
| LP.IDLS.L...S..G...A...C.....RAASEWGFFQVT.HGV..ALL..L...Q...FR.PF..KA. |
Retrocopy | LPVIDLSSLLEQSSSGAEAAAEQCRASIVRAASEWGFFQVTNHGVPQALLDELHQAQVAVFRRPFHLKAS |
|
Parental | AGLLN---GSYRWGAPTAATSLRHLSWSEAFHVPLASISGAACDFGDLSSLRGVMQEVADAMSRVAKTVA |
| ..LL.....SYRWG.PTA.T.L..LSWSEA.H.P......AA.D.......R.V..EV..AMS..A...A |
Retrocopy | QPLLDFSPESYRWGTPTA-TCLDQLSWSEAYHIPTTNTT-AAAD----DKTRLVVEEVSTAMSKLAQRLA |
|
Parental | VALAGSLLQG----GGHDEHEAAAAFPAGCDETTCYLRLNRYPACPFAADTFGLVPHTDSDFLTVLCQDH |
| ..L...LL.G....G.......AAA....C...TC.LRLNRYP.CP......GL.PHTDSDFLT.L.QD. |
Retrocopy | GILVADLLLGDSSIGDGEDDDTAAAVVSRCTRSTCFLRLNRYPPCPAPSGAYGLCPHTDSDFLTILHQDG |
|
Parental | VGGLQLLKDGRWVAVKPRPDALIVNIGDLFQAWSNNRYKSVEHKVVANATAERFSAAYFLCPSYDS---P |
| VGGLQL.K.GRWVAVKP.P.ALIVN.GDL.QAWSN.RY.SVEH.V.A....ERFS.A.FLCPSYD....P |
Retrocopy | VGGLQLVKAGRWVAVKPNPGALIVNVGDLLQAWSNDRYRSVEHRVMASDARERFSVAFFLCPSYDTLVRP |
|
Parental | VGTCGEPSPYRDFTFGEYRRKVQEDVKRTGRKIGLPNFLKQQ |
| ....G.P..Y..FTFGEYR....EDV..TGRK.GL..F.K.. |
Retrocopy | RCGAGGPPRYESFTFGEYRNQIREDVRLTGRKLGLQRFRKPE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_13 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.