>retro_sbic_14
ATGGCCATGGCGGCACCACGCGTCCTAGTCCTGCCTTACCCCGCGCAGGGCCATGTCACCCCAATGATGGAGCTCTCCCA
CTGCCTCGTCGAGCACGGCGTCAAGGTCACCTTCGTGAACACCGAGGCAAACCACGGTTTGATTCTTGGTGCCTTGGCGA
CCGGAGACAGCGAATTCGGCGGGGTCGACATGGTGTCCATACCGGACGGCCTGGGCTGCGGCGAAGACCGGAAGGATCTC
GCCCGTCTCACCGACTCCTTCTCCAAGTTCATGCCCGCCGAGCTGGAGAAGCTCATTGCCAGCATCAATGCCGACGAGCA
AGAGCGCGAGAAGGCCAGCTGGTTGATTGCCGATGTGAACATGGCGTGGGCCTTCCCCGTGGCGAAGAAGCACGGCCTCC
GGACCGCCGGGTTCTGCCCGTCGTCGGCGGCGATGTTCGCGATGAGGATCAAAATTCCTGAGATGATAAGCGACGGCGTT
CTCGACGAGAGAGGCTGGCCCAAGCGGCGCGGCACGTTCCGGCTGGCTCCGGCGATGCCGGCCATCGACACGTCGGAGTT
CTCGTGGAACCGCGCCGGCGACGCCAAGGGCCAGCCAATCATCTTCCAGCTGATCCTCCAGAACAACGCGGCCACGCACC
TGGCCGAGACCATCGTCTGCAACTCCGTCCAGGAGCTCGAGCCCGGGGCCTTTGCGCTCTTCCCCGGCGTCCTCCCCGTG
GGCCCGCTCTCGGTCTCCTCCGACAAGCCGGTCGGCGGCTTCTGGGCCGAGGACGCCTCCTGCGCCGCGTGGCTGGACGC
GCAGCCGGACAGCTCCGTCGTGTACGTCGCGTTCGGCAGCCTCGCCGCCTACGACGCAGCGCAGCTAGTCGAGCTCGCCG
AGGGGCTGCTGCTGACCTCACGGCCGTTCCTGTGGGTGGTCAGGCCGGGGTTGGCGGGCGAGCACCTCCTTGAGCAGCTC
CGCCGCCGCGCCGCGCCGCGCGGGCGCGTGGTGAGCTGGTGCCCGCAGCAGAGCGTGCTGGCGCACCCGGCGGTCGCCTG
CTTCCTGACGCACTGCGGCTGGAACTCGACGATGGAGGCGGTGCGGAGCGGCGTGCCGCTCCTGTGCTGGCCCTACTTCA
CCGACCAGTTCTTGAACCAGAGCTACATCTGCGACGTGTGGGGGACAGGGCTGAAGGTGCCATTGCCGCCCGCGGCGGCG
GCGGCGGCGGCACACGGAGCGGGGCTTGTGGGGAGAGACGTTGTTCGGGACAAGATCGAGGAGCTGCTCCGCGACAATGA
GACCAAGGCGAGGGCGCTCGCGCTGCGGGACCTCGCCGGTCGGGCAGTCGGCGATGGCGGCTCGTCGCGCCAGAATCTCA
GGCGGTTCTTGGATCTTGTGCGAGGAGTGAAGAGCTAG
ORF - retro_sbic_14 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
55.61 % |
Parental protein coverage: |
86.33 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAKAHVLVLPMPCQGHVTPLMELSHRLVDQGFEVTFVNTDVDHALVVTALDATGGGVAALGGGIHLASIP |
| MA...VLVLP.P.QGHVTP.MELSH.LV..G..VTFVNT...H.L...AL.ATG......GG.....SIP |
Retrocopy | MAAPRVLVLPYPAQGHVTPMMELSHCLVEHGVKVTFVNTEANHGLILGAL-ATGD--SEFGG-VDMVSIP |
|
Parental | DGLADDEDRKDINKLVDAYSRHMPGYLESLLADMEA--AGRPRAKWLVGDVNMGWSFEVAKKFGIRVVSF |
| DGL...EDRKD...L.D..S..MP..LE.L.A...A....R..A.WL..DVNM.W.F.VAKK.G.R...F |
Retrocopy | DGLGCGEDRKDLARLTDSFSKFMPAELEKLIASINADEQEREKASWLIADVNMAWAFPVAKKHGLRTAGF |
|
Parental | WPAASACLAFMLKIPNLIEEGLINDKGLPVRQETFQLAPGMPPLHSSQLSWNNAGEPEGQHIIFDLVTLN |
| .P...A..A...KIP..I..G.....G.P.R..TF.LAP.MP....S..SWN.AG...GQ.IIF.L...N |
Retrocopy | CPSSAAMFAMRIKIPEMISDGVLDERGWPKRRGTFRLAPAMPAIDTSEFSWNRAGDAKGQPIIFQLILQN |
|
Parental | NKLNELAEMVVSNSFYEAEAGAFKLFPSILPIGPLFADPAFRKPVGHFLPEDERCIKWLDTQPDASVVYV |
| N....LAE..V.NS..E.E.GAF.LFP..LP.GPL.......KPVG.F..ED..C..WLD.QPD.SVVYV |
Retrocopy | NAATHLAETIVCNSVQELEPGAFALFPGVLPVGPL--SVSSDKPVGGFWAEDASCAAWLDAQPDSSVVYV |
|
Parental | AFGSITIFDPRQFEELAEGLELTGRPFLWVVRPDFTPGLSKAWLHE-FQQRVAGKGMIVSWCSQQQVLAH |
| AFGS....D..Q..ELAEGL.LT.RPFLWVVRP....GL....L.E....R.A..G..VSWC.QQ.VLAH |
Retrocopy | AFGSLAAYDAAQLVELAEGLLLTSRPFLWVVRP----GLAGEHLLEQLRRRAAPRGRVVSWCPQQSVLAH |
|
Parental | RAVACFVSHCGWNSTMEGVRNGVPFLCWPYFCDQYLNRSYIINVWRTGLAV |
| .AVACF..HCGWNSTME.VR.GVP.LCWPYF.DQ.LN.SYI..VW.TGL.V |
Retrocopy | PAVACFLTHCGWNSTMEAVRSGVPLLCWPYFTDQFLNQSYICDVWGTGLKV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_14 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.