>retro_sbic_16
ATGGCTCGCATCCTGCTCGCCGCGTTCGTGGCGCTGCTTGTCGTCGTTAGCCCGTGCCACGAAAGACCAGCGCCGGCGCC
GCAACAGGCAGCGAAAGAGAAGGTGGTGGCGGTGGACGGCATCACTGCCATCTACAACTTCGGCGACTCCCTGTCGGACA
CCGGGAACCTGCTCCGCGAAGGCGCCACGGGCATGCTGCAGCACACCACGGGTCTTCCCTACGGGTCCGCCATCGGCGGC
GCCACCGGCCGATGCTCCGACGGGTACCTCATGATAGATTACCTCGCGAAGGATCTCGGCTTGCCTCTGCTGAACCCGTA
CCTCGACGATGGCGCCGACTTCTCGCACGGCGTCAACTTCGCCGTGGCCGGTGCCACGGCGCTCGACGCGGCGGCGCTCG
CCAGGAGAGGGGTCGCCGTCCCTCACACCAACAGCTCTCTAGGCGTCCAGCTGCAGCGGTTCAAGGACTTCATGAGCGCC
AACACACAGTCCCCGGAGGAGATCCGCGAGAAGCTGGCTCATTCCTTGGTCATGGTTGGGGAGATCGGCGGCAACGACTA
CAACTACGCCTTCTCGGCGAACAAGCCGGTGGCCGGCGGCGCGCGCAACATCTACAACTTCGGGCGCATGGCGACCGGCG
TGGCCGAGGCGATGGCGCTCGTCCCGGACGTAGTGCGTTCCGTCACGAGCGCGGCCAGAGAGCTCCTCGACATGGGCGCG
ACGCGGGTGGTGATCCCGGGCAACTTCCCGCTCGGGTGCGTGCCGAGCTACATGGCGGCGGTGAACGAGACGGACCCGGC
AGCGTACGACGCCAACGGCTGCCTGGCGGCGCTGAACCTGTTCGCCCAGATGCACAACGTGCTGCTGCAGCAGGGCATCC
GAGAGCTGCGCCGGTCCTACCCGTCGGCGACCATCTCGTACGCCGACTACTTCTACGCGTACGTGCGGATGCTGAGGGAC
GCCGGCAAGACGGGGTTCGACGAGGGGGCGCGGACCACGGCGTGCTGCGGCGCTGGCGGCGGCGCCTACAACTTCGACAT
GGACCGGATGTGCGGCGCGCCAGGCGCGTCGGTGTGCGCGAGGCCCGACGAGCGCATTAGCTGGGACGGCGTGCACCTGA
CGCAGCGCGCCAACAGCGTCATGAGCGACTTGCTCTACCACAAGGGATTCGCGTCCCCAGCGCCGGTGGAATTCCCGTGA
ORF - retro_sbic_16 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
56.62 % |
Parental protein coverage: |
95.47 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LGRVLVVAF--LLVACSSSSSSCCPGAAAAP----TTVDGITAIYNFGDSITDTGNLIREGATGVLRYIG |
| ..R.L..AF..LLV..S.......P....A.......VDGITAIYNFGDS..DTGNL.REGATG.L.... |
Retrocopy | MARILLAAFVALLVVVSPCHERPAPAPQQAAKEKVVAVDGITAIYNFGDSLSDTGNLLREGATGMLQHTT |
|
Parental | KLPYGIDLDLLHGPTGRCSNGYLMIDFLAKYLGLPLLNPYLDKAADFTHGVNFAVAGATALDTATLAERG |
| .LPYG.......G.TGRCS.GYLMID.LAK.LGLPLLNPYLD..ADF.HGVNFAVAGATALD.A.LA.RG |
Retrocopy | GLPYG---SAIGGATGRCSDGYLMIDYLAKDLGLPLLNPYLDDGADFSHGVNFAVAGATALDAAALARRG |
|
Parental | VTNALTNSSLDVQLAWFKDFMASATNS-NEIRRKLASSLVML-EIGGNDFNYAFQQQQTRPSDGAGYGLG |
| V....TNSSL.VQL..FKDFM...T.S..EIR.KLA.SLVM..EIGGND.NYAF......P..G...... |
Retrocopy | VAVPHTNSSLGVQLQRFKDFMSANTQSPEEIREKLAHSLVMVGEIGGNDYNYAF--SANKPVAGGARNIY |
|
Parental | NVTRIVETLAQAGALVPPVVQSISNAAEELLEMGAVRVVIAGNFPIGCVPVYLAGANVTEPAAYDGDGCL |
| N..R.....A.A.ALVP.VV.S...AA.ELL.MGA.RVVI.GNFP.GCVP.Y.A..N.T.PAAYD..GCL |
Retrocopy | NFGRMATGVAEAMALVPDVVRSVTSAARELLDMGATRVVIPGNFPLGCVPSYMAAVNETDPAAYDANGCL |
|
Parental | GVLNAFAELYNARLRGAVAALQRAHPRAVVAYADYFAAYARVLREARARGFDPARTRTACCGAAAGAAYY |
| ..LN.FA...N..L......L.R..P.A...YADYF.AY.R.LR.A...GFD.....TACCGA..GA..Y |
Retrocopy | AALNLFAQMHNVLLQQGIRELRRSYPSATISYADYFYAYVRMLRDAGKTGFDEGARTTACCGAGGGA--Y |
|
Parental | GFDESRFCGAPGTAVCADRDRDRYVSWDGVHPTQHAYAEMAELLYRGGLAYPPPIKWP |
| .FD..R.CGAPG..VCA....D...SWDGVH.TQ.A...M..LLY..G.A.P.P...P |
Retrocopy | NFDMDRMCGAPGASVCA--RPDERISWDGVHLTQRANSVMSDLLYHKGFASPAPVEFP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_16 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.