>retro_sbic_2
ATGGTGCGCAAGGTGACCCTCAAGGTGATGGGTTGGATGTCCATCAGCGCGCTCTTGAGCATCGTCCTGGCCATGGGTCT
CCACTACTACGGCCTGCGCGCCACCACGGCCGCCATCTCCGTCAACTTCCTGAACCTGATCCCCGTGGCGACCTTCCTGA
TGGCTGTGCTGCTCCGCGTGGAGAAGCTGGCGGCGGGGACGTGGCCGGGGCGTGCGAAGATGGCCGGCACGGCCGTGTGC
GTGGGCGGCACCATGGTGGCCAGCCTGTACAGGGGCCCGCTGCTGCACCCGTGGCCGACGCACCTGCTCCGGCACCGCGC
CGCCACGGCGCCGCAGCACCACCGCAACATGCCGCTGGGCACCGTGTACCTGTGCGGCAGCTGCCTGGCCTACGCGCTCT
GGTTCGTCGTGCAGACGCGGGTGGGCAGGGTGTTCCCCTGCAAGTACCTGTCCACGATGCTGGCCTGCGTCTGCGGCACC
GTCCAGGCGCTCGCCATCGGCGCCGTCATCAGCAGGGGCGACCCGGCGTCGACGACGTGGCGGCTGTCGTGGGACCTCCG
CCTGGTCACCGTCGTCTACTCGGGGGTCTTCAACACCGCCGCCACCTTCTGCATCATCTCATGGGCCATCACCAGGCGAG
GCCCCATCTACCCGTCCATGTTCAACTCCCTCTCGCTCGTCGCAACCACCGTGCTCGACTCGCTGCTGCTCGGCACCGAC
GTCTCCGTCGGCAGCCTGCTCGGCGACGCGCTCATCATCCTCGGACTCTATGCCTTCCTCTGGGGAAAAGGCAGAGAGAT
GAAGCACCTCAAACAACAACAAGAGCAGCAGCAGCTCAACGGGACGGGACCATGA
ORF - retro_sbic_2 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
56.64 % |
Parental protein coverage: |
93.36 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MGLYYYGLQVTSAAYSVVFLNLIPIVTFAIAILVRAEKVALGKWPSRLKVLGALTCVGGTMIVSLLKGHL |
| MGL.YYGL..T.AA.SV.FLNLIP..TF..A.L.R.EK.A.G.WP.R.K..G...CVGGTM..SL..G.L |
Retrocopy | MGLHYYGLRATTAAISVNFLNLIPVATFLMAVLLRVEKLAAGTWPGRAKMAGTAVCVGGTMVASLYRGPL |
|
Parental | LHLWPTHLLKLSHGSAPASGGHHHDMLTGTLFLSGSCLSYAVWFIVQARVGKVFPSMYWGTMLTCLLGSI |
| LH.WPTHLL......AP....HH..M..GT..L.GSCL.YA.WF.VQ.RVG.VFP..Y..TML.C..G.. |
Retrocopy | LHPWPTHLLRHRAATAPQ---HHRNMPLGTVYLCGSCLAYALWFVVQTRVGRVFPCKYLSTMLACVCGTV |
|
Parental | QAFVVSLFLSHD---RADWRLKWDLQLLTVVYSGVLNTGINFVLISWAVSRRGPIYPSMFNSLSLIITVV |
| QA.......S........WRL.WDL.L.TVVYSGV.NT...F..ISWA..RRGPIYPSMFNSLSL..T.V |
Retrocopy | QALAIGAVISRGDPASTTWRLSWDLRLVTVVYSGVFNTAATFCIISWAITRRGPIYPSMFNSLSLVATTV |
|
Parental | MDSLLLGTKIYVGGVVGALLIIVGLYAFLWGKGKELQAAAAEKKKK |
| .DSLLLGT...VG...G..LII.GLYAFLWGKG.E........... |
Retrocopy | LDSLLLGTDVSVGSLLGDALIILGLYAFLWGKGREMKHLKQQQEQQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_2 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.