>retro_sbic_25
ATGGACAGCGACAGCGAAGAAGGCGACTTCTCCACGTACGCGCAAGTGGAACGGGCCTTCAACTCCATGGAGGGCCCGTC
CGCGCAGGAGCGCATCGACTGCATCGTCCCCTTCCTCGTGTCCCTCCTGCCCGCGCCCTACGTCCCGGCCCTCGAGGTCG
AGCCCGACTCCGACGATGACCGCTTCTCGCTCACCTCCTCCGACTCCGAGTCCGGGGCGTCCGACGACCACGACGCGCTC
GCGTTCGCGGCCGTGCCGGGCGATGGCGAGGACCGCATCAGCCGCCTCCCGGACACGCTCCTGGCCGACATCATCCACCG
CCTCCCCACCAAGGACGCCGGGCGCACCGCCACGCTCTCCACGCACTGGCGCCGCATGTGGGCCGGGACCCCGCTCCTTG
TCGACGACGCGCACCTCCTCGGCGCCGGAGGGACCAACGACGTCCCCGTCGTGCGCGCGCTCGCGCGCTGCGTGGCCGCG
CACCCGGGCCCCGTCCGCGGCGCGCGCGTCACCCGCGTCTCCTTCCACGCTCACGAGTACGCGCTCCGGCGCTTGGTCGC
GGACCTCGCCGACAAGGACGTCCGGGACCTCATCCTCGTCAACCGCCCGTGGCCGCTCGACATGCCGCTCCCCGACGACA
TCCTCCGCTGCGCCTCCCTCGAACGCCTCTACCTCGGCGTATGGAAATTCCCCAAGACGACAGCCGCGCACCCGCCTGTG
TTCCCCGACCTCCGTGAGCTCGGACTCTTCCACAGCCTCGTCCGCAACGAAGAACTCGACTCCCTGCTCGCGCACTGCCC
CAAGCTGGAGGTCCTCTCTCTCGTCATGTCGTACCACGAGCCGTTGCGTCTCCACCTAACCTCCAACAGCCTCAAGATCG
CGGTGGAATGGATGTCGTCCTTCGACGAGGTCGTTGTTGAAGACGCCCCAAGCCTCGAGCGGCTGCTCTTCCAGAGCATC
TTGGGGAGGAAGCCCGTCAAGATTTTTCGTGCGCCGAGGCTGGAGGTGCTTGGGGTCCTCGACCTCGACCTCCACAAGCT
TGAGATCGGTGGCACTGTCATCAAGGCTGGGTTGAAAGTGAGTGCTAGCAACATGGTACCAAGCTTAAAGATACTAGCCG
TGAAGGTTCAGTTTGAATGCAACAGGGAGGCCAAGATGTTGTCTACTTTGCTGAAATGCTTTCCTTGCTTGGAGACGCTT
CACATAATGCCCACTCCATCTGAGACACCAGACAGCATACATGAACATGACTTGAGGTTCTGGGAGCACTTGGGTCCTTG
TGAATGCCTTGAGTCGCACCTGAAGACTGTTATGCTCCATGGGTCCTTGGTGGAAGGTCATGGGGCTGGTTTTGTCAGGT
ATGTCATGAGGGAGGGCAAGACACTCAAGACTATCGCCATTGTTTGCAGTGATGAGGAGGCGAGCGGCTGTAGAGAGTCA
GCTGTTGGCCGAAGCGGTGAAATTACTCTTTGTATTGCCACCCCACGCTGGTGTTTCCAAGCTGCCATTGATTTGTCACT
GGACGATCCCTTTGGTTCGGTGAGGCCTCAGGCATGA
ORF - retro_sbic_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.92 % |
Parental protein coverage: |
78.31 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VPAPEVAGDDSDSDSEHERFSLTSSDSSEASGGVGADPAAAFHPAAVGDGEDHISHLPDALLSNIISRLT |
| .PAP.V.......DS...RFSLTSSDS.....G...D..A....A..GDGED.IS.LPD.LL..II.RL. |
Retrocopy | LPAPYVPALEVEPDSDDDRFSLTSSDSES---GASDDHDALAFAAVPGDGEDRISRLPDTLLADIIHRLP |
|
Parental | TKEAARTAVLSTRWGGVWAATPLLVDDAHFFGADRHSDIPIMRAVSRCVAAHPGPVRAVRVTRVSFHANE |
| TK.A.RTA.LST.W...WA.TPLLVDDAH..GA....D.P..RA..RCVAAHPGPVR..RVTRVSFHA.E |
Retrocopy | TKDAGRTATLSTHWRRMWAGTPLLVDDAHLLGAGGTNDVPVVRALARCVAAHPGPVRGARVTRVSFHAHE |
|
Parental | YPLQRLVADLADKDVKDLILFNRPWPLNMPLPVDILRCASLERLYLGVWHFPEITAARPSVFHELRELGL |
| Y.L.RLVADLADKDV.DLIL.NRPWPL.MPLP.DILRCASLERLYLGVW.FP..TAA.P.VF..LRELGL |
Retrocopy | YALRRLVADLADKDVRDLILVNRPWPLDMPLPDDILRCASLERLYLGVWKFPKTTAAHPPVFPDLRELGL |
|
Parental | FHCVVRDKDLDTLLAHCPKLEIFSIVMSYGAPSRLRIVSPSLRVAVDWQSTLREVSVEDAPCLERMIFHT |
| FH..VR...LD.LLAHCPKLE..S.VMSY..P.RL...S.SL..AV.W.S...EV.VEDAP.LER..F.. |
Retrocopy | FHSLVRNEELDSLLAHCPKLEVLSLVMSYHEPLRLHLTSNSLKIAVEWMSSFDEVVVEDAPSLERLLFQS |
|
Parental | IETRRSIKIVSAPRLQVLGFLNLNLHKLEIGGTAIRAGMNVGARAMVPSLKILAVTLQFACNQEAKMLPT |
| I..R...KI..APRL.VLG.L.L.LHKLEIGGT.I.AG..V.A..MVPSLKILAV..QF.CN.EAKML.T |
Retrocopy | ILGRKPVKIFRAPRLEVLGVLDLDLHKLEIGGTVIKAGLKVSASNMVPSLKILAVKVQFECNREAKMLST |
|
Parental | LLKCFPHLEKLHVLAIPSKPPSS--AHGLEFWESLDSCECLRLRLNTLNVYGCLVQTNEIGFLQYMIREG |
| LLKCFP.LE.LH....PS..P.S...H.L.FWE.L..CECL...L.T....G.LV.....GF..Y..REG |
Retrocopy | LLKCFPCLETLHIMPTPSETPDSIHEHDLRFWEHLGPCECLESHLKTVMLHGSLVEGHGAGFVRYVMREG |
|
Parental | KALRAVGL |
| K.L..... |
Retrocopy | KTLKTIAI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_25 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.