>retro_sbic_26
ATGGAGGGAGGCGGGAGCGCGGCGAAAGGGCCGGTGGTGGTGACGGGGGCGTCGGGCTTCGTCGGCTCCTGGCTCGTCAT
GAAGCTCCTCCAGGCCGGCTACACCGTCCGGGCGACCGTGCGCGATCCCGCGAACGCTGCCAAGACGAAGCCATTGCTGG
ACCTTCCCGGAGCAACGGAGCGCCTGTCCATATGGAAAGCCGACCTGGCGGAGGAAGGCAGCTTCGACGACGCCATCAGG
GGCTGCACCGGCGTCTTCCACGTCGCCACGCCCTTGGACTTCGAGTCCCAAGACCCCGAGAACGAGGTGATCAAGCCGGC
GGTGGAAGGGGTGATCAGCATCTTGCGAGCCTGCAAGGAGGCCGCCGCCGCCGGCGGCGGCACCGTGCGCCGCGTCGTCT
TCACTTCCTCCGCCGGGACGTGCAGCGTCGAGGAGCGGCAGAGGCCCGTCTACGGCGACGACGACTGGAGCGACGTCGAT
TTCTGCCGTCGCGCCAAGATGACCGGGTGGATGTACTTCGTGTCCAAGACCCTGGCGGAGAAGGCGGCGCTGGCGTACGC
GGCGGAGCACGGCGTGGACCTCGTCAGCATCATCCCGACGCTCGTCGTCGGCCCTTTCGTCAGCTCCGGCATGCCGCCCA
GCCTCGTCACCGCGCTGGCGCTCGTCACGGGGAACGAGGCACACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTC
GACGACCTCTGCGACGCCGAGATCTTCCTCTTCGAGCACCCGGCCGCCGCCGCCGGACGCTACGTCTGCTCCTCGCACGA
TGCCACCATCCACGGCCTCGCCGCCATGCTCAGGGATAGGTACCCCGAGTACGACATCCCGCAGAGGTTCCCTGGGATCG
AGGACGACCTCCAGCCAGTGCGCTTCTCGTCCAAGAAGCTCCTAGACCATGGGTTCACTTTCAAGTACACGGCAATGGAG
GACATGTTCGACGCAGCCATCCGGACGTGCCGGGAGAAGGGCCTCATCCCCCTCGCCACTGCCGGAGGCGGAGGGGACGA
CTCTGCCTCAGTGCGCGCACCTGGCGAGACGGATGTGACGATTGTTTG
ORF - retro_sbic_26 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.11 % |
Parental protein coverage: |
98.34 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | IEGGASATKGPVVVTGASGFVGSWLVMKLLHAGYTVRATVRDPANVEKTKPLLDLPGATERLSLWKADLA |
| .EGG.SA.KGPVVVTGASGFVGSWLVMKLL.AGYTVRATVRDPAN..KTKPLLDLPGATERLS.WKADLA |
Retrocopy | MEGGGSAAKGPVVVTGASGFVGSWLVMKLLQAGYTVRATVRDPANAAKTKPLLDLPGATERLSIWKADLA |
|
Parental | VEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVEGMISIMQACKEA----GTVRRIVFTSSAGTV |
| .EGSFDDAIRGCTGVFHVATP.DFES.DPENEVIKP.VEG.ISI..ACKEA....G...R.V...S.... |
Retrocopy | EEGSFDDAIRGCTGVFHVATPLDFESQDPENEVIKPAVEGVISILRACKEAAAAGGGTVRRVVFTSSAGT |
|
Parental | NVEERRK-PVYDEDSWTDVDFCRRVKMTGWMYFVSKTLAEKAAMAYAAEHGVDLITVIPTLVVGPFLSAG |
| ...E.R..PVY..D.W.DVDFCRR.KMTGWMYFVSKTLAEKAA.AYAAEHGVDL...IPTLVVGPF.S.G |
Retrocopy | CSVEERQRPVYGDDDWSDVDFCRRAKMTGWMYFVSKTLAEKAALAYAAEHGVDLVSIIPTLVVGPFVSSG |
|
Parental | MPPSLVTAMALVTGNEAHYSILKQVQFIHLDDLCDAHLFLFEHP-AAAGRYVCSAADATIHGLAAMLRER |
| MPPSLVTA.ALVTGNEAHYSILKQVQF.HLDDLCDA..FLFEHP.AAAGRYVCS..DATIHGLAAMLR.R |
Retrocopy | MPPSLVTALALVTGNEAHYSILKQVQFVHLDDLCDAEIFLFEHPAAAAGRYVCSSHDATIHGLAAMLRDR |
|
Parental | YPEYNIPRRFPGIDDDLQLVRFSSKKLLDHGFTFRYTTMENMYDAAIRTCREKGLIPLATAGGEGGSASA |
| YPEY.IP.RFPGI.DDLQ.VRFSSKKLLDHGFTF.YT.ME.M.DAAIRTCREKGLIPLATAGG.GG..SA |
Retrocopy | YPEYDIPQRFPGIEDDLQPVRFSSKKLLDHGFTFKYTAMEDMFDAAIRTCREKGLIPLATAGG-GGDDSA |
|
Parental | GAPGPGGTDAAI |
| ....PG.TD..I |
Retrocopy | SVRAPGETDVTI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_26 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.