>retro_sbic_29
ATGTCCACCACGGAAGAAGCCGCTGGTGGCTACGACGACTACGACCGCCTGAGCGAGCTGAAGGCGTTCGACGACACCAA
GGCCGGCGTCAAGGGCCTCGTGGACGCCGGCGTCACGACCGTCCCCGCCATCTTCCGCCGCCACCGCCAGGACGTGCCGC
CGCAGGTATCGTCCTCTAGCAGCAGCAGCAGCAGCAGCACTGTTAGCTCGATCCCGGTCATCGACCTCTCGGCGGCGGAC
GCAGACGCAGCCACGCGGGAGCATGTGGTCGCGCAGGTGAAGGCCGCGGCGGAGACGGTGGGGTTCTTCCAGCTGGTGAA
CCACGGCGTCCCCGGCGAGCTCCTGTCGGAGATGCTGGCGTCGGTGAGGCGGTTCAACGAGGCGTCCCCAGTGACGAAGC
GTCCCTACTACACGCGGGACGCCCGGCGGAAGCTGCGGTTCAACTCCAACTTCGACCTGTTCCAGTCGCCGGCGGCCAAC
TGGCGCGACACGCTCTTCTGCGAGGCGGCGCCGGAGCCGCCGCGTGCCGAGGAGCTGCCGCCCGCCGTGAGGCGCGTGTT
CCTGGAGTACGGCGGCGCGGCGCGGGAGGTGGCGGCGCGGGTGCTGGCGCTGCTGTCGGAGGCCCTGGCGCTGGCGCCCG
GGCACCTCGCCGGGATGGGGTGCGCCGAGGGCCTCAGCCTGGTGTGCAACTACTACCCGCCGTGCCCGGAGCCGGACCTC
ACCATGGGGTGCAGCGCGCACTCGGACCCCAGCTTCCTGACCGTGCTGCTCCAGGACGCGCACGCGGGGGGAGGACTGCA
GGCGCTGCTCGAGGACAGGTGGGTGGACGTGCCTCCGGCGGTGCCCGGCGGCGCGCTACTGGTGAACGTCGGCGACCTCC
TCCAGCTGGTCAGCAACGGGCGGTTCAGGAGCGTGGAGCACCGGGTGGTGGCCAACCGGAGCAGGGACACGGCGAGGGTG
TCAGTGGCGTGCTTCTTCAACGCGGACATCGCGAGGTCCACGAGGCTGTATGGACCCATCGCGGAGCTCGTCACCTCGGA
CGACGGCGACGGCGACGGCGATGGCGCGGGAAGTGGAAGGGCGCTGTACAGGAGCGTGACGGTCCCGGAGTTCCTGGCGC
ACTACGACAAGAAAGGCCTCGACGGTCGCCCGGCGCTCCACCACTTCCTGCTGAAGCAATAA
ORF - retro_sbic_29 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.93 % |
Parental protein coverage: |
89.84 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSATEPAAGLASDGYDRRRELLQAFDDTKAGVKGLVDAGVTAIPAIFR-HPPESLEATSSPPPTDVVASA |
| MS.TE.AAG...D.YDR..EL..AFDDTKAGVKGLVDAGVT..PAIFR.H........SS.......... |
Retrocopy | MSTTEEAAG-GYDDYDRLSEL-KAFDDTKAGVKGLVDAGVTTVPAIFRRHRQDVPPQVSSSSSSSSSSTV |
|
Parental | GTIPVIDLAA----AAPRGEVASQVKRAAETVGFFQVTNHGVPRELMAGVLAGVRRFNEQQPEVKRRFYT |
| ..IPVIDL.A....AA.R..V..QVK.AAETVGFFQ..NHGVP.EL....LA.VRRFNE..P..KR..YT |
Retrocopy | SSIPVIDLSAADADAATREHVVAQVKAAAETVGFFQLVNHGVPGELLSEMLASVRRFNEASPVTKRPYYT |
|
Parental | RDTARKARFCSNYDLFQSAAANWRDTLFCELAPDPPRPEELPEAVRGVMLEYGDAATKLALWVLELLSES |
| RD..RK.RF.SN.DLFQS.AANWRDTLFCE.AP.PPR.EELP.AVR.V.LEYG.AA...A..VL.LLSE. |
Retrocopy | RDARRKLRFNSNFDLFQSPAANWRDTLFCEAAPEPPRAEELPPAVRRVFLEYGGAAREVAARVLALLSEA |
|
Parental | LGLASDHLREMGCAQSLNVASHYYPPCPEPHLTLGTSRHADATFVTVLLQD--GTGGLQVLLDRGGWVDV |
| L.LA..HL..MGCA..L.....YYPPCPEP.LT.G.S.H.D..F.TVLLQD....GGLQ.LL....WVDV |
Retrocopy | LALAPGHLAGMGCAEGLSLVCNYYPPCPEPDLTMGCSAHSDPSFLTVLLQDAHAGGGLQALLE-DRWVDV |
|
Parental | PPL--PGALIVNIGDFLQLVSNGRFRSVEHRVLANKSRDTPRVSVACFFNADAKRSTRLYGPITD |
| PP....GAL.VN.GD.LQLVSNGRFRSVEHRV.AN.SRDT.RVSVACFFNAD..RSTRLYGPI.. |
Retrocopy | PPAVPGGALLVNVGDLLQLVSNGRFRSVEHRVVANRSRDTARVSVACFFNADIARSTRLYGPIAE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_29 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.