>retro_sbic_31
ATGACAAGCGAGTCCGCCACCGTGATCCAGATGGACGACGGCAGGGCCCCGGCACCAGCAGCAGCAGGAGCAGCCGCCGC
CGCCGCCGCGTCGTCGTCCTACGCCACTGCTCCAACAAGTATCAGTGCTGCTGAACCAGCGGCGGCGCCGCGCAAGACGA
CCACCGTCCCGTTCCTGCTGCGCTCGGGCGCCGAGGGGTTCCGGCGCTGTCTGGCCGTGATCGACTTCCTTCTAAGGGTA
GCCGCCTTCGGGCCCACGCTGGCGGCCGCCATCTCCACGGGCACCGCCGACGAGAGGCTGTCCGTGTTCACCAACTTCTT
CCAGTTCCATGCGAGGTTCGACGACTTCCCGGCCTTCACCTTCTTCCTGGTGGCCAACGCCGTCGCCGCGGGGTACCTGG
TGCTGTCGCTGCCCTTCTCCGTCGTGGTCATCCTCCGGCCCAACAAGGCCACGGGCGGCGTCAGGCTGCTCCTGCTCCTC
TGCGACGTGCTGATCATGGCGCTGCTCACGGCGGCCGGCGCCGCCGCCGCGGCCATCGTGTACGTGGCGCACTCGGGCAA
CCGGCGCGCCAACTGGGTTCCCATCTGCATGCAGTTCCATGGATTCTGCCAGCGCACCAGCGGCTCCGTCGTCGCCACCT
TCCTCGCCGTGCTCGTCTTCATCGTGCTCATCCTCATGGCCGCCTGCGTCATCAGACGCAGCAAGTG
ORF - retro_sbic_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.88 % |
Parental protein coverage: |
89.96 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GKAPAVATAPPPPAAAAAVPAAATTTAPRKTG-VPFFRR--ADRGSRCVALLDFVLRVAAFGPALAAAIA |
| G.A.A.A.......A.....AA....APRKT..VPF..R..A....RC.A..DF.LRVAAFGP.LAAAI. |
Retrocopy | GAAAAAAASSSYATAPTSISAAEPAAAPRKTTTVPFLLRSGAEGFRRCLAVIDFLLRVAAFGPTLAAAIS |
|
Parental | TGTSDETLSVFTQFFQFHARFDDFPALLFFMVANAIAAGYLVLSLPFSAVIVLRPQAI--GLRHLLLVCD |
| TGT.DE.LSVFT.FFQFHARFDDFPA..FF.VANA.AAGYLVLSLPFS.V..LRP.....G.R.LLL.CD |
Retrocopy | TGTADERLSVFTNFFQFHARFDDFPAFTFFLVANAVAAGYLVLSLPFSVVVILRPNKATGGVRLLLLLCD |
|
Parental | MIIAALLTAAAAAAAAIVDLAHSGNLRANWVPICMQFHGFCQRTSGAVVGSFLAVLVLLFLVILAAFAIR |
| ..I.ALLTAA.AAAAAIV..AHSGN.RANWVPICMQFHGFCQRTSG.VV..FLAVLV...L...AA..IR |
Retrocopy | VLIMALLTAAGAAAAAIVYVAHSGNRRANWVPICMQFHGFCQRTSGSVVATFLAVLVFIVLILMAACVIR |
|
Parental | K |
| . |
Retrocopy | R |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_31 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.