>retro_sbic_45
ATGGATCCTTGTCACCAATCCATAGAGACCGCAGGCGCGAAGGACTACAGTGACCCACCCCCAGCACCATTGGTCAACGC
CGGCGAGCTGGGCAAGTGGTCCCTCTACCGCGCCGCCATCGCCGAGTTCGTCGCCACGTTGCTCTTCGTCTACGTCACGC
TGGCCACCGTCATCGGGCACAAGCGCCAGGCCGAGTCCCAGCCGTGCGGCAGCGTCGGCGTGCTGGGCATCGCGTGGTCC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCGGGCATCTCCGGCGGCCACATCAACCCGGCGGTCACCTTCGG
CCTTCTGCTGGCGCGCAAGGTGTCGCTTGTGCGCGCCGCGCTCTACGTGGTGGCGCAGTGCCTGGGCGCCATGTGTGGCG
CTGGCCTCGTCAAGGCCTTCCACGGGGCCCATTGGTACCTTCACTACGGCGGCGGCGCCAACGAGCTCTCCGCCGGCTAC
TCCAAGGGAGCCGGTCTGGCCGCCGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTGTTCTCGGCCACCGACCCCAA
GCGCAAGGTCAGGGATTCGCACGTCCCGGTCCTAGCGCCGCTGCCCATCGGATTCGCGGTGTTCATGGTGCACCTGGCCA
CCATCCCCGTCACCGGCACGGGCATCAACCCGGCAAGGAGCCTGGGGCCGGCCGTTGTGTACAACCAGCGAAAGGCGTGG
GAAGATCAGTGGATATTCTGGGTCGGCCCCCTCATTGGCGCTGCCGCCGCCATGATCTACCACCAGTTAGTTCTCCGCGC
CGGCGCAGCCAAGGCCTTGGCATCCTTACGCAACAACTACCATATCTGA
ORF - retro_sbic_45 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.87 % |
Parental protein coverage: |
90.41 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASSSGPDAACGGVGILG |
| AKDYSDPPPAPLV.A.EL.KWSLYRA.IAEFVATLLF.Y.T.ATVIG..H...A.S......CG.VG.LG |
Retrocopy | AKDYSDPPPAPLVNAGELGKWSLYRAAIAEFVATLLFVYVTLATVIG--HKRQAESQ----PCGSVGVLG |
|
Parental | IAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSA-FY |
| IAW.FGGMIF.LVYCTAG.SGGHINPAVTFGL.LARKVSLVRA.LY.VAQCLGA.CG.GLVK.F..A..Y |
Retrocopy | IAWSFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAALYVVAQCLGAMCGAGLVKAFHGAHWY |
|
Parental | VRYGGGANGLSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIP |
| ..YGGGAN.LS.GYSKG.GLAAEI.GTFVLVYTVFSATDPKR..RDSHVPVLAPLPIGFAVFMVHLATIP |
Retrocopy | LHYGGGANELSAGYSKGAGLAAEIVGTFVLVYTVFSATDPKRKVRDSHVPVLAPLPIGFAVFMVHLATIP |
|
Parental | ITGTGINPARSLGAAVIYNNDKTWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK |
| .TGTGINPARSLG.AV.YN..K.W.D.WIFWVGP.IGAA.A..YHQ.VLRA.AAK |
Retrocopy | VTGTGINPARSLGPAVVYNQRKAWEDQWIFWVGPLIGAAAAMIYHQLVLRAGAAK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_45 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.