>retro_sbic_57
GGGGCGGAGGTGAGGCCGATTACGAGGTCTCCGACGACCACCGCGCCGCGTGGGAGCGTCACGAGCAATCGGTGTAGGAG
CTCCTCTAGCGGCGCCGCGCCTACGCCATGGCCGTGCGGGCCTGCCTCCGCCGCTTTGGCGAGCGTGAAATGGAGCGCCA
CGACCGCCTCCGAGCCCTCATGGTCCGGCTCGAGGTCGATGGCCAGGTCGATCGTCTCCTCCGCGCGCTAGGAGGACGAC
C
ORF - retro_sbic_57 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.41 % |
Parental protein coverage: |
52.1 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | GVEARPTTRSPTTTAPCGSVTSNWCRSSSSGAAPTPWPCGPASAASARRPRTLASAKWSATTASEPSWSG |
| G.E.RP.TRSPTTTAP.GSVTSN.CRSSSSGAAPTPW...P...ASA.....LAS.KWSATTASEPSWSG |
Retrocopy | GAEVRPITRSPTTTAPRGSVTSNRCRSSSSGAAPTPW---PCGPASA----ALASVKWSATTASEPSWSG |
|
Parental | SRPMARSIVSSAR-RRTT |
| SR.MARSIVSSAR.RRTT |
Retrocopy | SRSMARSIVSSAR>RRTT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_57 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.