>retro_sbic_7
ATGGCCTTCAACCTGGCTCAGTGCGCCACCGCTGCGGCGTCCGTCGCGCCCCGCACCCCTCGCCCTGCTAGGTCCGCGGT
CGCGGCGTCCGTGTCTGTCTCCACAAGGAAGGCGGCGGACGGCAGGCTGCGGCTGCAGCGGCAGGCGAGCTGCGAGCCGT
CGGTGGCGCCGTCGCGTTCGGTGTTCTGCCGGGCCGCGGTGTCGGGGAAGAGCGCGGCCGACCGGGCCGCCTCCACCAGG
AGGAGGTCCGGCGTGCCGGTGTTCGTCATGATGCCGCTGGACACCGTGAAGAAGTGCGGCAGCGCGCTGAACCGCCGCAA
GGCGGTGCAGGCGAGCCTGTCCGCGCTCAAGAGCGCGGGCGTGGAGGGCATCATGGTGGACGTGTGGTGGGGCATCGCCG
AGAGCGACGGCCCCGGGAGGTACAACTTCGCGGGGTACATGGAGCTCATGGAGATGGCGCGCAAGGCCGGGCTCAAGGTG
CAGGCCGTCATGTCCTTCCACCAGTGCGGCGGCAACGTCGGCGACTCCGTCAACATCCCGCTGCCGCGGTGGGCCGTGGA
GGAGATGGAGAAGGACCAGGACCTCTGCTACACCGACCAGTGGGGCCGACGCAACTACGAGTACGTCTCCCTCGGCTGCG
ACGCCATGCCCGTCCTCAAGGGCCGCACCCCCGTCGAGTGCTACACCGACTTCATGCGCGCGTTCCGGGACCACTTCGCC
GACTACCTCGGCAACACCATCGTGGAAATCCAGGTCGGCATGGGCCCCGCCGGCGAGCTGCGCTACCCGTCGTACCCGGA
GAGCAACGGCACCTGGAAGTTCCCCGGCATCGGCGCCTTCCAATGCAACGACAGGCACATGCGTAGCAGCCTGAAGGCGG
CGGCGGAGGCGGCCGGCAAGCCGGAGTGGGGCCACGGTGGCCCCACGGACGCTGGCGGCTACAACAACTGGCCCGAGGAC
ACCCTCTTCTTCCGCGCCGACAACGGCGGGTGGAGCACCCAGTACGGCGACTTCTTCCTGTCGTGGTACTCGCAGATGCT
GCTGGAGCACGGCGACCGCATCCTGTCGGGCGCCACGTCCGTGTTCGGCGCGTCGTCGCCCGTGGAGGTGTCCGTGAAGG
TGGCCGGCATCCACTGGCACTACGGCACCCGGTCGCACGCGCCGGAGCTGACCGCGGGGTACTACAACACGCGGCACCAC
GACGGGTACCGCCCCATCGCGGACCTCCTGGCCCGCCACGGCGCCGTGCTCAACTTCACCTGCGTGGAGATGCGGGACCA
CGAGCAGCCGCAGGAGGCGCAGTGCATGCCGGAGCACCTGGTCCGGCAGGTGGGCGCCGCGGCGCGCGCAGCGGGCGTGG
GCCTCGCGGGCGAGAACGCGCTGCCCAGGTACGACGGCACGGCGCACGACCAGGTGGTAGCCACCGCCGCGCAGCGCGCC
GCCGAGGACCGGATGGTGGCGTTCACGTACCTGCGCATGGGGCCCGACCTCTTCCACCCGGACAACTGGCAGCGGTTCGC
CGCCTTCGTGCGCCGCATGAACGGCGCCGGGTCGTGCCGGGAGGCCGCGGAGCGGGAGGCGCACGGCGTCGCGCAGGCAA
CCGGGTCGCTGGTGCACGAGGCCGCCGTCGCGCTGCGGAGCTG
ORF - retro_sbic_7 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.51 % |
Parental protein coverage: |
84.22 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ADVAAELKTKAGVPVFVMMPLDTVRKDGNSLNRRKAVEASLAALKSAGVEGIMVDVWWGIAEADGPGQYN |
| AD.AA......GVPVFVMMPLDTV.K.G..LNRRKAV.ASL.ALKSAGVEGIMVDVWWGIAE.DGPG.YN |
Retrocopy | ADRAASTRRRSGVPVFVMMPLDTVKKCGSALNRRKAVQASLSALKSAGVEGIMVDVWWGIAESDGPGRYN |
|
Parental | FNGYMELMEMARKTGLKVQAVMSFHQCGGNVGDSVTIPLPRWVVEEMDKDQDLAYTDRSGRRNYEYVSLG |
| F.GYMELMEMARK.GLKVQAVMSFHQCGGNVGDSV.IPLPRW.VEEM.KDQDL.YTD..GRRNYEYVSLG |
Retrocopy | FAGYMELMEMARKAGLKVQAVMSFHQCGGNVGDSVNIPLPRWAVEEMEKDQDLCYTDQWGRRNYEYVSLG |
|
Parental | CDTLPVLKGRTPIQCYADFMRAFRDHFATFMGNTIVEIQVGMGPAGELRYPSYPESDGTWSFPGIGEFQC |
| CD..PVLKGRTP..CY.DFMRAFRDHFA...GNTIVEIQVGMGPAGELRYPSYPES.GTW.FPGIG.FQC |
Retrocopy | CDAMPVLKGRTPVECYTDFMRAFRDHFADYLGNTIVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQC |
|
Parental | YDRYMLSSLKAAAESVGKPEWGNGGPGDAGGYKNWPEDTGFFRRE-GGWSNEYGQFFMSWYSQMLLEHGE |
| .DR.M.SSLKAAAE..GKPEWG.GGP.DAGGY.NWPEDT.FFR...GGWS..YG.FF.SWYSQMLLEHG. |
Retrocopy | NDRHMRSSLKAAAEAAGKPEWGHGGPTDAGGYNNWPEDTLFFRADNGGWSTQYGDFFLSWYSQMLLEHGD |
|
Parental | RILSAATGVYTGSPGVKISVKVAGIHWHYGTRSHAAELTAGYYNTRHHDGYAPIARMLARHGAVLNFTCV |
| RILS.AT.V...S..V..SVKVAGIHWHYGTRSHA.ELTAGYYNTRHHDGY.PIA..LARHGAVLNFTCV |
Retrocopy | RILSGATSVFGASSPVEVSVKVAGIHWHYGTRSHAPELTAGYYNTRHHDGYRPIADLLARHGAVLNFTCV |
|
Parental | EMRDHEQPQDAQCRPEALVQQVAAAAREAGVGLAGENALPRYDETAHDQVVATAADRAAEDRMVAFTYLR |
| EMRDHEQPQ.AQC.PE.LV.QV.AAAR.AGVGLAGENALPRYD.TAHDQVVATAA.RAAEDRMVAFTYLR |
Retrocopy | EMRDHEQPQEAQCMPEHLVRQVGAAARAAGVGLAGENALPRYDGTAHDQVVATAAQRAAEDRMVAFTYLR |
|
Parental | MGPDLFQPDNWRRFAAFVKRMSQPGARDACREQVEREADGVAHATQPLVHEAAVAL |
| MGPDLF.PDNW.RFAAFV.RM...G....CRE..EREA.GVA.AT..LVHEAAVAL |
Retrocopy | MGPDLFHPDNWQRFAAFVRRMNGAG---SCREAAEREAHGVAQATGSLVHEAAVAL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_7 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.