>retro_shar_108
ATGGCCTGGGTGCTGAAGATGGACAAGGCAGTGGAAACGGGCCTGGTCCACGACTTCGACGCCAGCTTGTCGGGCATCGG
GCAAGAGCTGGGCGCGGGCGCCTACAGCATGAGTGACGTCTTGGCCCTACCCATTTTCAAGGAGGAAGATGCTGGCCTTC
CATTGGACGGTGACGCCAAGCAGCCGCCCTTTCAGTACATCTTGTATGCTGCGACCTCCCCTGCGGTCAAATTACATGAT
GAAAGCCTCACTTACTTGAACCAAGGTCAGTCCTATGAAATCCGGATGCTGGACAACCGGAAGGTGGGAGAGATGCCCGA
GATCAATGGGAAGCTGGTGAAGAGCATTATCAGAGTGGTGTTCCATGACCGAAGGCTCCAGTACACAGAGCACCAGCAGC
TGGAAGGCTGGAAGTGGAATCGCCCTGGGGACCGCTTGCTTGATCTCGATATTCCGATGTCTGTGGGTGTCATCGACCTG
AGGACCAACCCAGGCCAGTTGAATGCCGTTGAGTTTCTCTGGGATCCTGCAAAGCGCACGTCCGTGTTTATTCAGGTACA
CTGCATCAGCACGGAGTTCACTCCGCGGAAGCATGGCGGGGAGAAGGGGGTTTCTTTCAGAGTCCAAGTTGACACATTTA
AACAGAATGAAAACGGTGACTACACTGATCACCTGCACTCAGCGAGCTGCCAGATTAAAGTTTTTAAGCCTAAAGGAGCA
GACAGAAAACAGAAAACTGACCGAGAAAAGATGGAGAAGAGGACGGCTCAGGAGAAAGAAAAGTACCAGCCTTCATATGA
GACTACAGTCCTCAGTGAGTGCTCCCCGTGGCCTGTTGCAAGTGGAGCCTATGGAAGTGATAGCCCTGCTCCTGCTCCCA
CTTTCACCTCTGCTCAGCACCCCACCTTCAGTGTCCCAGATAGCAGTTCTACCTCCCCAAACCATCAAGGAGAGGGAATT
CCCCAAAGCTCCAGTGAACGGATTTATCCAACAGCCACCATCCAAGAAGTTCAACAGTGGCTGGCCAGGAACAGGTTCTC
CAGCTATGCCAGGCTCTTCACCAATTTCTCAGGCGCAGATTTATTCAAGTTGACAAGAGAGGATCTCATACAAATCTGTG
GTGCAGCTGAAGGCATTCGTCTCTATAATTCACTGAAGTCAAGGACTATTCGACCTCGTCTCACGATCTACGCCTGCCAG
GAGCAGCCCAGGACCAGACTGATGGTAAGACCAAATACAGGCCAAGGAGAACAAAGCAGTAGTGCAATATTTGTTTATCA
TGCGATCTACCTGGAAGAAGTGGCAGCTTCAGAAGTCACTCGGAAATTGGCTTCAATATTTAATATTCCTCTGCACCAGA
TCAACCAGGTTTACAGACAGGGTCCTACCGGGATTTACATTCTCCTTAGCGACCAGGTGGTTCAAAATTTTCAAGATGAG
AGTTCTTTCTTATTTGCCACTCTAAAAGCAGAAAATGGCGAAGGGCTCCATATCCTTTTGAAATGA
ORF - retro_shar_108 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.35 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAWALKLPLADEVIESGLVQDFDSSLSGIGQELGAGAYSMSDVLALPIFKQEESSLPTDNENKILPFQYV |
| MAW.LK....D...E.GLV.DFD.SLSGIGQELGAGAYSMSDVLALPIFK.E...LP.D...K..PFQY. |
Retrocopy | MAWVLKM---DKAVETGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKEEDAGLPLDGDAKQPPFQYI |
|
Parental | LCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRRLQYTEHQQLEGW |
| L.AATSPAVKLHDE.LTYLNQGQSYEIRMLDNRK.GE.PEINGKLVKSI.RVVFHDRRLQYTEHQQLEGW |
Retrocopy | LYAATSPAVKLHDESLTYLNQGQSYEIRMLDNRKVGEMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGW |
|
Parental | RWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCISTEFTMRKHGGEKGVPFR |
| .WNRPGDR.LD.DIPMSVG.ID.R.NP.QLN.VEFLWDPAKRTSVFIQVHCISTEFT.RKHGGEKGV.FR |
Retrocopy | KWNRPGDRLLDLDIPMSVGVIDLRTNPGQLNAVEFLWDPAKRTSVFIQVHCISTEFTPRKHGGEKGVSFR |
|
Parental | VQIDTFKENENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPW |
| VQ.DTFK.NENG.YT.HLHSASCQIKVFKPKGADRKQKTDREKMEKRT..EKEKYQPSYETT.L.ECSPW |
Retrocopy | VQVDTFKQNENGDYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTVLSECSPW |
|
Parental | PEIT--YVNNSPSPG---FNSSHSSFSLGEGNG-SPNHQPEP-PPPVADNLLPTTTPQEAQQWLHRNRFS |
| P.....Y...SP.P........H..FS.......SPNHQ.E..P........PT.T.QE.QQWL.RNRFS |
Retrocopy | PVASGAYGSDSPAPAPTFTSAQHPTFSVPDSSSTSPNHQGEGIPQSSSERIYPTATIQEVQQWLARNRFS |
|
Parental | TFSRLFTNFSG |
| ...RLFTNFSG |
Retrocopy | SYARLFTNFSG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_108 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.