RetrogeneDB ID: | retro_shar_128 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834419.1:1315370..1315717(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRGBP | ||
Ensembl ID: | ENSSHAG00000010685 | ||
Aliases: | None | ||
Description: | MRG/MORF4L binding protein [Source:HGNC Symbol;Acc:15866] |
Percent Identity: | 54.1 % |
Parental protein coverage: | 62.37 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YDMQALHESEILPFPNSEKNFILPEEIIQEVKEGKVMIEDEMKEEIKEEVDPHTGTEDVFTSSGNLGKGA |
..MQ..HES.ILPF.N..KN..L...II...K.GK..I.D.MKEE.KE..D.H......FT.SGNLG... | |
Retrocopy | HNMQVFHESKILPFFNLAKNINLLDKII*NIKKGKI-IGDAMKEEMKEDIDLH----HLFTFSGNLGTAG |
Parental | EKSSGKEKEKSS-SDSGSKEGADKRKRNRVTEKVLNANSNPSSPSAAKRRRT |
.K..GKEKEKS....S.S.EGA.KRK.N.VTE.VL......SSPSAAK..RT | |
Retrocopy | QKYIGKEKEKSK<TGSRSNEGAAKRKYNWVTENVLKCKHQSSSPSAAKF*RT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000020272 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016803 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027569 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010685 | 1 retrocopy |
retro_shar_128 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012953 | 1 retrocopy |