>retro_shar_17
ATGGCGGCCTCATCGGTTCTGGGCGCCGGCCTGGCTCGGATTCTCTTCTATCCGACACTTCTGTACACGCTGGTGCTCGA
TAAGGTGTCAAGAGCCGGGCACCGCGACTGGTACCACCGCATCGACTCTACCGTGCTGCTGGGCGCGCTGCCGCTGCGCA
GTCTCACGCTCCGGCTAGTAGAGAAGGAGAATGTCCGAGCAGTGATCACCATGAATGAAGAATATGAGACGAGGTTCCTG
TGTAACACTTTTGAGGAATGGAAAGCAGTTGGAGTAGAACAACTGCGTCTCAGCACAGTGGATATGACTGGAGTCCCAAC
TTTGGAAAACCTAAAGAAAGGGGTCCAGTTCACACTCAAGTACATGGCCCTGGGGAAATGTGTCTATGTTCACTGCAAGG
CTGGGCGCTCCAGAAGCGCCACCATGGTGGCGGCCTATTTGATACAGGTGTATAACTGGAGTCCCGAGGAGGCCGTGAAA
GCTATTGCTGACATCCGTTCTCACATCCAAATCCGACCTCGGCAGGTAAAAGTTCTCAAGGAATTCCACAGACAGGTCAT
GGCTGAAGCAGAAAAAAACAAGATTTCCCAAAAAGAACTAGCTAACGAATGA
ORF - retro_shar_17 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.33 % |
Parental protein coverage: |
96.77 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TLQVTLIEKENVRAVITMNEEYETRFLCNTFEEWKAVGVEQLRLSTVDMTGVPTLENLKKGVQFTLKYMT |
| .L...L.EKENVRAVITMNEEYETRFLCNTFEEWKAVGVEQLRLSTVDMTGVPTLENLKKGVQFTLKYM. |
Retrocopy | SLTLRLVEKENVRAVITMNEEYETRFLCNTFEEWKAVGVEQLRLSTVDMTGVPTLENLKKGVQFTLKYMA |
|
Parental | LGKCVYVHCKAGRSRSATMVAAYLMQVYNWSPEEAVKAIADIRSHIHIRPGQVEVLKEFHKQVIAEAEKT |
| LGKCVYVHCKAGRSRSATMVAAYL.QVYNWSPEEAVKAIADIRSHI.IRP.QV.VLKEFH.QV.AEAEK. |
Retrocopy | LGKCVYVHCKAGRSRSATMVAAYLIQVYNWSPEEAVKAIADIRSHIQIRPRQVKVLKEFHRQVMAEAEKN |
|
Parental | KVSQKEPADE |
| K.SQKE.A.E |
Retrocopy | KISQKELANE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_17 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.