RetrogeneDB ID: | retro_shar_241 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834751.1:1208220..1208723(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUSP22 | ||
Ensembl ID: | ENSSHAG00000015165 | ||
Aliases: | None | ||
Description: | dual specificity phosphatase 22 [Source:HGNC Symbol;Acc:16077] |
Percent Identity: | 60.59 % |
Parental protein coverage: | 83.66 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGNGMNKILPGLYIGNFKDARDAEQLSKNKVTHILSIHDSARPMLEGVKYLCIPAADSPSQNLTRHFKES |
.GN..N.ILPG.YI.NF.D...AE.LSK.KV..I.SIH...RPML.G.KYLCIPAADS..QNL.R.FKES | |
Retrocopy | IGNVVNNILPGIYIDNFEDIKVAEYLSKDKVIPIFSIHNGTRPMLKGIKYLCIPAADSLPQNLRRYFKES |
Parental | IRFIHECRLRGEGCLVHCLAGVSRSVTLVVAYIMTITDF-GWEDALHMVRAGRSCANPNLGFQKQLQEFE |
I.FIHE..LRG....VHCL..VSR...L.VAYIMTIT...G.....H.V.AG.SCA..NLGFQ.Q..EFE | |
Retrocopy | IGFIHESQLRG*DSPVHCLDSVSRNKILEVAYIMTITNL<GKMHNKHIVKAGGSCADLNLGFQEQFHEFE |
Parental | KNEVHQFRQWLKDEYGEDPLKDAEEAKNIL |
KN..H.F...LK..Y.E...KD.EE.KNIL | |
Retrocopy | KNQLHLFWL*LKGKYEENHSKD-EETKNIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000011289 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018218 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015165 | 2 retrocopies |
retro_shar_241 , retro_shar_310,
|
Tursiops truncatus | ENSTTRG00000001848 | 1 retrocopy |