RetrogeneDB ID: | retro_shar_327 | ||
Retrocopy location | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
| Coordinates: | GL841349.1:94694..95078(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ZDHHC3 | ||
| Ensembl ID: | ENSSHAG00000013738 | ||
| Aliases: | None | ||
| Description: | zinc finger, DHHC-type containing 3 [Source:HGNC Symbol;Acc:18470] |
Retrocopy-Parental alignment summary:
>retro_shar_327
GTACTTCATACGATGAATATAGCACAGATTTCCCTGCATGCCGTCATTATGGTGGGATTTCAGTTTCTGTATTGCTTTGA
AGAAGACTGGACAGAATGCACCTCATTTGTCCCACCCACCACAGTGATTCTCCTCATTCTGTTATGTTTTGAAGTCCTTC
TTTTTCTCATTTTCACATCAGTAATATTTGGACTCAGGTATACTCCATCTGCACTGATAAAACAGGAATAGAAAAATTGA
AAAAGGAAGAGAAAAGATGAGCTTAAAAAACAAAATGGATAAACATGAAAGCGGAATTTAACCTTCCATTCTCTATACCA
TGACTTACTTAGCCCATATGTTATAGCAGACCAGGGGAAAGCAGGCCTGTACCAGTATGTGGTC
ORF - retro_shar_327 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.08 % |
| Parental protein coverage: | 75.6 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | VLFTMYIALISLHALIMVGFHFLYCFEEDWTECSSFAPPTTVILLILLCFEALLFLIFTSVMFG-TQVHS |
| VL.TM.IA.ISLHA.IMVGF.FLYCFEEDWTEC.SF.PPTTVILLILLCFE.LLFLIFTSV.FG.TQV.S | |
| Retrocopy | VLHTMNIAQISLHAVIMVGFQFLYCFEEDWTECTSFVPPTTVILLILLCFEVLLFLIFTSVIFG<TQVYS |
| Parental | ICTDETGIEQLKKEERRWAKKTKWMNMKAVFGHPFSIAWLS-PFATPDQGKADP-YQYVV |
| ICTD...................W.NMKA.F..PFSI..L..P......G...P.YQYVV | |
| Retrocopy | ICTDXXXXXXXXXXXXXXXXXXXWINMKAEFNLPFSIP*LT*PICYSRPGESRP>YQYVV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_327 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sarcophilus harrisii | ENSSHAG00000013738 | 1 retrocopy |
retro_shar_327 ,
|