RetrogeneDB ID: retro_shar_402

Retrocopy location

• Organism: Tasmanian devil (Sarcophilus harrisii)
• Coordinates: GL841598.1:2372182..2372571(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MORN2
• Ensembl ID: ENSSHAG00000015584
• Aliases: None
• Description: MORN repeat containing 2 [Source:HGNC Symbol;Acc:30166]

Sequence

>retro_shar_402
GAAGTATGTAAAACTTGATTTATATTTCCAAATGGAGACAAATATGAAGATGACTGTTTGAGAATATCTTCTGGAGTCTT
TCAGAGAAATGGAAAAGAGATTCCTACCATCCTCAATGGAATAAACTATATGAAGGTCCACAAAAATGACAAAATGAATG
GAATTGGAAAAGTGTAACATTTTTCAGGAGCAGTATATGAAGGAGAGTTCAAGTACAATATGTGTCATGGAATAGGAACT
TATGCATTCCCAAATGGAGCAAAATACACTGGAAGTTTTGTAGAAAACAGGATGGAAGGTAAAAGAGAATTTACTGATAT
TTGTGGATTAGAATGGAGTGGTACCTTTCATTACCCAGCTGCTCAAGGATGGAACTAAAGCTACAGATA

Alignment

ORF - retro_shar_402 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.76 %
• Parental protein coverage: 76.92 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EVHKICFIFPNGDKYEGECTRISSGIFERNGSGVHTTPNGITYIGAWKDDKMNGIGRLTHFSGAVYEGEF
          EV.K..FIFPNGDKYE..C.RISSG.F.RNG....T..NGI.Y....K.DKMNGIG...HFSGAVYEGEF
Retrocopy EVCKT*FIFPNGDKYEDDCLRISSGVFQRNGKEIPTILNGINYMKVHKNDKMNGIGKV*HFSGAVYEGEF

Parental  KDNMYHGMGTYTFPNGAKYTGSFVENRVEGKGEYTDIRGLEWSGTFHYTAAPG-LKLKLQM
          K.NM.HG.GTY.FPNGAKYTGSFVENR.EGK.E.TDI.GLEWSGTFHY.AA.G...LKLQ.
Retrocopy KYNMCHGIGTYAFPNGAKYTGSFVENRMEGKREFTDICGLEWSGTFHYPAAQG<MELKLQI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sarcophilus harrisii was not studied using RNA-Seq expression data.

ChIP-Seq

Sarcophilus harrisii was not studied using ChIP-Seq data.

EST

Sarcophilus harrisii was not studied using EST data.

TSS

Sarcophilus harrisii was not studied using FANTOM5 data.

Lab

retro_shar_402 was not experimentally validated.

Homology

Retrocopy orthology:

Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Oryctolagus cuniculus	ENSOCUG00000001075	1 retrocopy	retro_ocun_1360,
Sarcophilus harrisii	ENSSHAG00000015584	1 retrocopy	retro_shar_402 ,