RetrogeneDB ID: retro_shar_568

Retrocopy location

• Organism: Tasmanian devil (Sarcophilus harrisii)
• Coordinates: GL850085.1:54810..55675(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KAT8
• Ensembl ID: ENSSHAG00000011739
• Aliases: None
• Description: K(lysine) acetyltransferase 8 [Source:HGNC Symbol;Acc:17933]

Sequence

>retro_shar_568
GAAGAGATTAACAAGGTGAAATATATGGACAAAATTCATATTGGGAAATATGAGATTGATGCATGGTACTTCTCCCCCAT
TCCCAGAAGGTTATGAAATATATCTCAAACTTTGGCTTTGGGAATACTGCCTGAAGTACATGAAGTTTGAGAAGAGATAC
CATTTCCATTTGGTACAGTGTTAGTGGAGACAGCCACTTGGCAGGCAAATCTACCAACAGAACATCATCTTCATGTATGA
GGTGGATGGCAAAAACACAAAGATTTATTGCTAGAACCTGTATCTATTGGCCAAATTCTTCTTGGAGTACAAGATCCTGT
ACTTTGATGTGGAACCATTTGTCTTCTACATCTTGGCCAAAGTGGACAGACAGGAAGCTCACATCTTAGGCTATTTCTCT
AAGGAGAAGGAGTCTCCAGATGGGAATAATGTGGCTTACATCTCGATCCTCTCCCCATATCAACACCAAAGTTATGGCAA
GTTCTTCATTGCCTTCAATTATAAATTGCTAAATGTAAAAAGTGTAATGGGTTCTCCAGAAATAAACTATTAGATCTGAG
CAAATTGAGCTATTGTAGTTACTGCTCCTGGGTCGTGCTGGAGACCATGCAAGACTTCCAGGGCACACTGTCTATCAAAG
ACTTCAGTCAGATCAGCAGAATCATTCAAAATGATATCATCAGCACTCCGCAGTCACTCAACATGGTCAAGTACTGAAAA
AGTCAGCATGTCATTGCACCATCCCCAAGCTAGTGGAAGAGCACCTTAAGAAATACCCGTATAAGAAACCACTCATATAC
AAGTGGATTCAGTTTGTTTGATTTGGGCACCACCCAAGAATAAGTAATCAAAGTTGTTCAAGAAG

Alignment

ORF - retro_shar_568 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.01 %
• Parental protein coverage: 61.94 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  EAITKVKYVDKIHIGNYEIDAWYFSP-FPEDYGKQPKLWLCEYCLKYMKFEKSYRFHLGQCQWRQPPGKE
          E.I.KVKY.DKIHIG.YEIDAWYFSP.FPE.Y....KLWL.EYCLKYMKFEK.Y.FHL.QC.WRQP.G..
Retrocopy EEINKVKYMDKIHIGKYEIDAWYFSP>FPEGYEIYLKLWLWEYCLKYMKFEKRYHFHLVQC*WRQPLGRQ

Parental  IYRKNNISVYEVDGKDHKIYCQNLCLLAKLFLDHKTLYFDVEPFVFYILTEVDRQGAHIVGYFSKEKESP
          IY..N.I..YEVDGK..KIYC.NL.LLAK.FL..K.LYFDVEPFVFYIL..VDRQ.AHI.GYFSKEKESP
Retrocopy IYQQNIIFMYEVDGKNTKIYC*NLYLLAKFFLEYKILYFDVEPFVFYILAKVDRQEAHILGYFSKEKESP

Parental  DGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSPE-KPLSDLGKLSYRSYWSWVLLEILRDFRG
          DGNNVA.I..L.PYQ...YGKF.IAF.Y.L....S..GSPE...L.DL.KLSY.SY.SWV.LE...DF.G
Retrocopy DGNNVAYISILSPYQHQSYGKFFIAFNYKLLNVKSVMGSPE<NKLLDLSKLSYCSYCSWVVLETMQDFQG

Parental  TLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTPKLVEEHLKSAQYKKPPIT-VDSVCLKWAP
          TLSIKD.SQ...I.QNDIIST.QSLNMVKY.K.QHVI...P......L..........T.VDSVCL.WAP
Retrocopy TLSIKDFSQISRIIQNDIISTPQSLNMVKY*KSQHVIAPSPS*WKSTLRNTRIRNHSYT>VDSVCLIWAP

Parental  PKHKQVKLSKK
          PK.K..KL.KK
Retrocopy PKNK*SKLFKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sarcophilus harrisii was not studied using RNA-Seq expression data.

ChIP-Seq

Sarcophilus harrisii was not studied using ChIP-Seq data.

EST

Sarcophilus harrisii was not studied using EST data.

TSS

Sarcophilus harrisii was not studied using FANTOM5 data.

Lab

retro_shar_568 was not experimentally validated.

Homology

Retrocopy orthology:

Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001625	1 retrocopy	retro_mmur_462,
Myotis lucifugus	ENSMLUG00000004779	1 retrocopy	retro_mluc_1916,
Monodelphis domestica	ENSMODG00000001856	1 retrocopy	retro_mdom_1344,
Rattus norvegicus	ENSRNOG00000019585	1 retrocopy	retro_rnor_1626,
Sarcophilus harrisii	ENSSHAG00000011739	1 retrocopy	retro_shar_568 ,