RetrogeneDB ID: | retro_shar_622 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856818.1:394766..395360(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000010366 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.5 % |
Parental protein coverage: | 83.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VAAAGAYVHVVTHFIQAGLLSALGSLGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALDLCIAI |
.AA.GAY.H...HF....LL..L..LGL..WL...P....TE.KRL....GF.F..G.GLGP.LDLC... | |
Retrocopy | LAATGAYLHIFIHFTPTSLLFPLDCLGLIPWLVGMPYHCKTEKKRLLIVSGFTFVVGSGLGPTLDLCMTA |
Parental | NPSIIPTSFLGTAMIFSCFTLSALYARRRSYLFLGGILMSAMSLMLFSSLGNLFFGSYWLFQANLYVGLV |
NP.I.P.S..GTA..FSCFTLS...AR...Y.FLGGIL.SAMSL...SSLGNL.FG...LFQ.NLY.GL. | |
Retrocopy | NPNIVPIS*AGTAIVFSCFTLSSVLARHHGYVFLGGILISAMSLIFVSSLGNLLFGFHLLFQVNLYLGLA |
Parental | VMCGFVLFDTQLIIEKA-ENGDKD-YIWHCVDLFLDFVTLFRKLMMILAMNEKDKKKEKK |
V.CGF.LFDTQLII.K..ENGDKD.YI.H.VDLFLDF........MILAMNEK.K.K.K. | |
Retrocopy | VICGFILFDTQLIIKKV>ENGDKD<YI*HGVDLFLDFAVFLWGFLMILAMNEKNKMK*KE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018588 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008400 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000021032 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007882 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015590 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000004277 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005137 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016821 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010366 | 1 retrocopy |
retro_shar_622 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000001165 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002427 | 1 retrocopy |