RetrogeneDB ID: | retro_shar_758 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL862247.1:29030..29915(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ALDH7A1 | ||
Ensembl ID: | ENSSHAG00000013162 | ||
Aliases: | None | ||
Description: | aldehyde dehydrogenase 7 family, member A1 [Source:HGNC Symbol;Acc:877] |
Percent Identity: | 61.39 % |
Parental protein coverage: | 55.37 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | KKAKEAWKIWADIPAPKRGEIVRQIGEALRQKIQILGNLVSLEMGKIFVEGVGEVQEYVDICDYAVGLSR |
...KEAW.I.AD.PA.K.GEIV....EA..QKIQILGN.VSLEMGKI..EG..E.QE..DI.DYA.GLS. | |
Retrocopy | QRLKEAWEI*ADTPALKQGEIVNR--EAM*QKIQILGNMVSLEMGKILEEGTAEIQENMDIYDYAIGLS* |
Parental | MIGGPILPSERPGHALIEQWNPLGLVGIITAFNFPVAVYGWNNAIALIC-GNVCLWKGAPTTSLISVAVT |
MIG...LP.ER.G..LIEQW..LGLVG..TA..FPVA..GWNNAIALIC.G.....KG......I.V... | |
Retrocopy | MIGESLLPYERSG--LIEQWSLLGLVGVFTAYDFPVAEFGWNNAIALIC>GMFAFGKGHQSLLSI-VQLS |
Parental | KIVAKVLEENNLPGAICSMTCGGADIGTAMAKDERVD-LLSFTGSTQVGKQVALMVQERFGRSLLELGGN |
K.....LE.NNLPG.IC...C.GA..GTAMA.DE.VD.LLSF....QVGK..A..VQERF.......G.N | |
Retrocopy | KR*CPSLEDNNLPGVICHIICDGANNGTAMARDEWVD<LLSFMRRIQVGK*MAVRVQERFKEKFVSFGRN |
Parental | NAIIAFEDADLNLVIPSALFAAVGTAGQRCTTARRLFLHESIHDEVVDKLKKAYA--QIRIGNPWDSNVL |
NAIIA.ED.DL..V.PSALFAA.GT..QRCTTAR..FLHESIHDE.VDKLKK..A..Q.....PWD.N.L | |
Retrocopy | NAIIALEDTDLTWV-PSALFAAMGTEVQRCTTAR*FFLHESIHDEDVDKLKKGIATFQFIFIDPWDPNIL |
Parental | YGPLHTKQAVNMFLAAVEDAKKQ |
YG.L.TK..VNMFL.AVE.A.KQ | |
Retrocopy | YGSLYTKEVVNMFLGAVEGA*KQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002143 | 1 retrocopy | |
Homo sapiens | ENSG00000164904 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025927 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012217 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013162 | 1 retrocopy |
retro_shar_758 ,
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