RetrogeneDB ID: | retro_shar_769 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL864757.1:196506..197044(-) | ||
Located in intron of: | ENSSHAG00000005871 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000004058 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.14 % |
Parental protein coverage: | 85.98 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PTAAGSLVGRVKESTSIKALSKRKLWNDQVTSKSSNNDVALDPEHSENENLEEVSQEAFDLMINENPPPQ |
P...........ESTSIKALSKRKL.NDQV.SKSSN.DV.LD.EHSENENLEEVSQEAFDL.I.ENPP.Q | |
Retrocopy | PSQTLKIIQPFAESTSIKALSKRKLCNDQVASKSSNTDVSLDLEHSENENLEEVSQEAFDLIIKENPPSQ |
Parental | YWKEVAEQRRKALYEALQENEKLHKEIEQKDNEIARLKEENKELAELAEHVQYMADMIERLTGQSLENFE |
YWKEVAE..RKALYE..QENEKL.K..EQK.NEIA.LKEENKEL..LA.H...MADMIERLTG.SLENFE | |
Retrocopy | YWKEVAEKWRKALYEVQQENEKLYKKSEQKNNEIAHLKEENKELS*LAGH---MADMIERLTG*SLENFE |
Parental | PRNNPAFEDSDS-GGEEAGSDLEQNRLATCEEKNASLPTDKITCI |
P.NNP.FE..DS.GGEEAGSDLEQN.LATC.EKNASLPTD...C. | |
Retrocopy | PQNNPVFE--DS>GGEEAGSDLEQNHLATCDEKNASLPTDG*PCV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006161 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014010 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014849 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000011682 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006715 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000728 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004982 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007969 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018782 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004058 | 2 retrocopies |
retro_shar_581, retro_shar_769 ,
|
Tupaia belangeri | ENSTBEG00000010502 | 2 retrocopies |