RetrogeneDB ID: | retro_shar_78 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL867624.1:14996..16064(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000001657 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ELAVL4 | ||
Ensembl ID: | ENSSHAG00000013832 | ||
Aliases: | None | ||
Description: | ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 [Source:HGNC Symbol;Acc:3315] |
Percent Identity: | 62.96 % |
Parental protein coverage: | 95.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PTSNTTNGPSSNSRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ |
P...T...P........S....G.T..DSKTNLI.NYLPQ.MT.EE.RSLF...G.I.SCKLVRD..TGQ | |
Retrocopy | PAPSTAAPPAVAGPSSSSRAMEG-TSSDSKTNLIINYLPQSMTEEELRSLFARVGKIQSCKLVRDRVTGQ |
Parental | SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY |
SLGYGF..Y..P.DAE.A...LNGL....KTIKVSYARP.S.SIRDANLY..GLPK.MTQKELE.LFS.Y | |
Retrocopy | SLGYGFIDYVHPRDAERAVCLLNGLQCPPKTIKVSYARPNSSSIRDANLYINGLPKNMTQKELEHLFSPY |
Parental | GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQALLSQL |
G.IITSRIL.D...G.SRGVGFIRF....EAEEAIK.LNGQKP.G..EP..V.FA.N..Q.T.Q..L.QL | |
Retrocopy | GHIITSRILTDKASGTSRGVGFIRFNMKSEAEEAIKALNGQKPCGILEPLVVRFAHNQTQVTPQNPLCQL |
Parental | YQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD |
..S......GPL..Q..R..L.N............P.T......LVG...PG.T.TGWCIF.YNL.PDSD | |
Retrocopy | PHSSH----GPLPPQPRRSGLNNTPIPTRAAQNLTPSTTENTRDLVGVTFPGQTVTGWCIFIYNLAPDSD |
Parental | ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK |
E..LWQLFGPFGAV.NVK.IRDFNTNKCK.FGFVTMT.Y.EAA.AIASLNGY.LG.RVLQVSFKTNK.HK | |
Retrocopy | ENILWQLFGPFGAVSNVKIIRDFNTNKCKRFGFVTMTSYNEAALAIASLNGYCLGGRVLQVSFKTNKVHK |
Parental | S |
. | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002464 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002044 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007145 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011267 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013832 | 1 retrocopy |
retro_shar_78 ,
|
Sarcophilus harrisii | ENSSHAG00000018139 | 1 retrocopy |