>retro_sita_6
ATGGAGAGGCTCCGGTGGAGCCGCCCCGGCTCCCTCCTCGTCCTCGCGGCGGCGTTCCTGGCGTCCGCCGCGGCGTCGAG
CGCCACCAGCATCGCCGACTGGGACGAGCACTGGCAGAAGCGCCGGGAGCTGGCCGAGGCGTCGGCCCGGGAGGCGTACA
AGCCCGACCCCTTCAACGTCACCAACAGCTTCAACGCCGCCGTGCACAGGTCCACCAGCCCGCGGCGCGAGATGCGGGAG
AAGAAGAAGAAGTCCAACGGCCCGTGCCGCGCCACCAACCCCATCGACAAGTGCTGGCGCTGCCGCAAGAACTGGGCCAC
GGACCGGCAGCGCCTGGCCCGCTGCGCCAGGGGCTTCGGCCGCGCCGCTACCGGCGGGCTCGGCGGCAAGATCTACGTCG
TCACCGACCCGACCGACGCCGACGTGGTGAACCCCCGCCCGGGGACGCTCCGGTGGGGCGCCATCCAGCCCGGCCCGCTC
TGGATCATCTTCGCCAGGTCCATGATCATCCAGCTCTCGCAGGAGCTCCTCGTCAGCAGCGACAAGACCATCGACGGCCG
CGGCGCGCAGGTCCACATCGCCAACGGCGGCGGCATCACCGTGCAGTTCGCGCGGAACGTCATCATCCACGGCCTCCACG
TGCACGACGTGAAGCACACCGACGGCGGGCTGATGCGGGACTCGCCGACGCACATGGGGCCCCGGACCAAGGCCGACGGC
GACGGCATCTCGCTGTTCGGCGCCACCGACGTGTGGATCGACCACATCTCCATGTCCAACTGCGAGGACGGGCTCATCGA
CGTCGTGCAGAGCTCCACGGGGGTCACCATCTCCAACTGCCACTTCACCAACCACAACGACGTGATGCTCTTCGGCGCCA
GCGACTCGTACCCGCAGGACCAGGTGATGCAGATCACCGTCGCCTTCAACCACTTCGGCAGGGGGCTCGTGCAGCGGATG
CCGCGCTGCCGGTGGGGCTTCTTCCACGTCGTCAACAACGACTACACGCACTGGCTCATGTACGCCATTGGAGGGAGCAA
CGCGCCTACCATCATCAGCCAGGGGAACAGGTACATCGCGCCGCCCAACATCGCCGCCAAGTTGATCACCAAGCACTACG
CCGACGAGGGGGTGTGGAAGAACTGGGTGTGGCACACGGAGGACGACCTCTTCATGAACGGCGCCGTCTTCCAGCCCTCC
GGCGGGGCGGTCCCCAGGAAGATCAACAAGAAGGAGTGGGTCAAGCCCAAGCCGGGATCCTACGTCACCAGGCTCACACG
CTTCTCCGGCACCTTGTCCTGCATCCCCGGCAGAAAGTGCTGA
ORF - retro_sita_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.21 % |
Parental protein coverage: |
99.55 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EGFRWSRPGSFVLYAVVLLLSAAVSEANIGEFDDYWRQRKLMADAAAEATYQHDPIEVPNQLNRAVHRSI |
| E..RWSRPGS..L......L..A.........D..W..........AEA.........P........... |
Retrocopy | ERLRWSRPGS-LLVLAAAFLASAAASSATSIAD--WDEHWQKRRELAEASAREAYKPDPFNVTNSFNAAV |
|
Parental | KKEDISTRREMLGQKKGKMNGPCKATNPIDRCWRCRKDWATDRKRLARCAQGFGRNTTGGLAGKFYVVTD |
| .....S.RREM...KK.K.NGPC.ATNPID.CWRCRK.WATDR.RLARCA.GFGR..TGGL.GK.YVVTD |
Retrocopy | HRST-SPRREMR-EKKKKSNGPCRATNPIDKCWRCRKNWATDRQRLARCARGFGRAATGGLGGKIYVVTD |
|
Parental | GTDDDVVNPRPGTLRWAVIQIEPLWITFAKTMIITLKEELIIRGDKTIDGRGVQVRIANGAQLTVQFANN |
| .TD.DVVNPRPGTLRW..IQ..PLWI.FA..MII.L..EL....DKTIDGRG.QV.IANG...TVQFA.N |
Retrocopy | PTDADVVNPRPGTLRWGAIQPGPLWIIFARSMIIQLSQELLVSSDKTIDGRGAQVHIANGGGITVQFARN |
|
Parental | VIIHNIHINDIISSNKNGGNIRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLSNCQDGLIDVIAKSTG |
| VIIH..H..D.......GG..RDSP.H.G.RT..DGDGI..FG.T.VW.DH.S.SNC.DGLIDV...STG |
Retrocopy | VIIHGLHVHDV--KHTDGGLMRDSPTHMGPRTKADGDGISLFGATDVWIDHISMSNCEDGLIDVVQSSTG |
|
Parental | VTISNCHMTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIG |
| VTISNCH.TNHNDVMLF..SD..P.DQ.MQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIG |
Retrocopy | VTISNCHFTNHNDVMLFGASDSYPQDQVMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIG |
|
Parental | GSKAPTIISQGNRYIAPPNLAAKQVTKQHDAPESEWKNWVWHSEDDLFMEGAYFTVTGGQINRQFNKKDL |
| GS.APTIISQGNRYIAPPN.AAK..TK.H.A.E..WKNWVWH.EDDLFM.GA.F...GG...R..NKK.. |
Retrocopy | GSNAPTIISQGNRYIAPPNIAAKLITK-HYADEGVWKNWVWHTEDDLFMNGAVFQPSGGAVPRKINKKEW |
|
Parental | IKPKPGSYVTRLTRFAGSLDCKPGKPC |
| .KPKPGSYVTRLTRF.G.L.C.PG..C |
Retrocopy | VKPKPGSYVTRLTRFSGTLSCIPGRKC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Setaria italica was not studied using RNA-Seq expression data.
Setaria italica was not studied using ChIP-Seq data.
Setaria italica was not studied using EST data.
Setaria italica was not studied using FANTOM5 data.
retro_sita_6 was not experimentally validated.
Retrocopy orthology:
Setaria italica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.