>retro_slyc_100
TCATCGTCGTCATCATCGGTTCCGAACACGAACTACGTGGTGCCACAAGACAAGGCTTCGTCTTGCATTACTCATCCCTT
GGCCGAGATCCTACGTGACCTGAACAAGAGAATTCCTGATAACAGCATCAAAGCAGGTAATAATGATGATCACTCCACCT
TTATCACCTGGTACCATGCTAACCGGATGTTGAGCTTCTACGCTCCAGGCTGGTGCGGGGAAGTACGAGATGTCATTTTC
TCAGATAACAGAAGTGTGACAGTGTTTATCGTGTCACTATACGCGGATCAGATGTAGAGGCACACCGTGAATCAACTGGA
ACAGTATCACAAGGCAGTGGACAGTACACAGATGTGGTTGCTGCTGCTGAGGAGATAGCATTTTGCAGAGCATGTGCTCG
TTTCGGGCTTGGCTTGTATCTGTATCAT
ORF - retro_slyc_100 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.75 % |
Parental protein coverage: |
66.51 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | SSPSSSVPNTNYVVPLDKASSCITRPLAEILRDLNKRIPDNIIKAGNNDDHSTFITWYHANRMLSFYAPG |
| SS.SSSVPNTNYVVP.DKASSCIT.PLAEILRDLNKRIPDN.IKAGNNDDHSTFITWYHANRMLSFYAPG |
Retrocopy | SSSSSSVPNTNYVVPQDKASSCITHPLAEILRDLNKRIPDNSIKAGNNDDHSTFITWYHANRMLSFYAPG |
|
Parental | WCGEVRDVIFSDNGSVTV-VYRVTIRGSDGEAHRESTGTVSPGNGQYTDVVAAAEEIAFCRACARFGLGL |
| WCGEVRDVIFSDN.SVTV.VYRVTIRGSD.EAHRESTGTVS.G.GQYTDVVAAAEEIAFCRACARFGLGL |
Retrocopy | WCGEVRDVIFSDNRSVTV<VYRVTIRGSDVEAHRESTGTVSQGSGQYTDVVAAAEEIAFCRACARFGLGL |
|
Parental | YLYH |
| YLYH |
Retrocopy | YLYH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_100 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.