RetrogeneDB ID:

retro_slyc_15

Retrocopy
location
Organism:Tomato (Solanum lycopersicum)
Coordinates:10:40568533..40568827(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:Solyc10g047330.1
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Solyc07g063580.2
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_slyc_15
ATGGCGAAGAACAGAAACAAGAAGAAAAACGGCCTAGCTGCCATGGATGTCTCCACTGACCAGACGGTCATGGATGCCCA
AGCGATGGATACTTTAGAATCAGCTGCTCCAAAACCACATTCAGGTGGATCACTTAGAAAGACGAAGGGAGTACAAATGA
AAATGACGAAGAATGTCAGGAAAAAGAAGGCCATGGCAAAGGCTATTTCAAAAAGTGAGAAATTGGAGGAAAGAATCACT
AGGAGTGAAAGCAAGATAGAGAGAACTAAAAATGCCAAACAGTTATACGAATGA

ORF - retro_slyc_15 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.91 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAKNRNKKKNGLAAMDVSTDQTVMDAQAMDTSESAAPKPHIGGSLRKTKGVQMKRTKNVRKKKAMAKAIS
MAKNRNKKKNGLAAMDVSTDQTVMDAQAMDT.ESAAPKPH.GGSLRKTKGVQMK.TKNVRKKKAMAKAIS
RetrocopyMAKNRNKKKNGLAAMDVSTDQTVMDAQAMDTLESAAPKPHSGGSLRKTKGVQMKMTKNVRKKKAMAKAIS
ParentalKSEKLEERITRSESKIERTKNAKQLYE
KSEKLEERITRSESKIERTKNAKQLYE
RetrocopyKSEKLEERITRSESKIERTKNAKQLYE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_15 was not experimentally validated.

Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Solanum lycopersicum Solyc07g063580.2 1 retrocopy
retro_slyc_15 ,



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