>retro_slyc_16
ATGGCAGAAGAAGTGAGCAACAAACAGGTCATTCTGAAACACTTTGTCACCAGTGACCTTAAGGAATCAGACATGGAATT
CAAAAATACCACCATCAAATTGAATGTTCCAGAAGGTTGTAATGCTATGGTTTTGAGGAATCTTTTCTTGTCATGTGACC
CTTACATGCGGTTACGCATGAAGAAATTTGAGGGTAGCTATATTGAGTCCTTCACTCCTGGCTCTCCTATCACAGGATAT
GGAGTGGCTAAAGTTTTGGAGTCTGGTGATTCGAACTTCCAGAAAGGTGACTTAGTTTTGGGAAGGACTGGATGGGAGGA
GTATAGTATTGTAACAGCTACTCCGACTCTGTTTAAAATTCATGACAAGGATGTGCCTCTTTCCTACTATACAGGAATCC
TCGGTATGCCTGGTCTCACAGCTTATGCTGGTTTTTACGAGGTTTGCTCCCCTAAGAAGGGAGAAACCGTCTTTGTTTCA
GCTGCTTCTGGAGCAGTTGGTCAGCTTGTTGGGCAATTTGCAAAGATGTTGGGTTGCTATGTTGTCGGTAGTGCTGGAAG
TAAAGAAAAGGTTGATCGGTTGAAGAGCACGTTTGGTTTTGATGAAGCTTTTAACTACAAAGAGGAGCAGGATTTAGACG
CGGCTCTGAAGAAGTACCTCCCTGATGGAATCGACATCTACTTTGAGAACGTTGGAGGGAAGATGCTTGATGCAGTTCTT
CTGAATATGAAAATCCATGGTCGTATTGCTGTGTGTGGGATGATCTCACAATACAACCTTGAGCAGACTGAAGGAGTGCA
CAACTTGTTCTGTCTCATCTCGAAACGAATCCGCATGGAAGGATTTCTTGTTCATGATTACTATCATCTTTACCCTAAGT
ATTTGGACATGATCATTCCGCAAATCAAGGCTGGTAAGGTTGTGTATGTGGAAGACATAGCTGAAGGCCTCGAAAGTGCT
CCCAGTGCTCTTGTTGGTCTCTTCTCTGGTCGCAATATTGGAAAGCAAGTTGTGATGGTTTCGCGTGAATGA
ORF - retro_slyc_16 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.79 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAEEMIMNNKQIILKHYVEGYPKESDLEFKNNNIKLNVPEGSNVVVLKNLYLSCDPYMRSRMSKLEGSYV |
| MAEE....NKQ.ILKH.V....KESD.EFKN..IKLNVPEG.N..VL.NL.LSCDPYMR.RM.K.EGSY. |
Retrocopy | MAEEV--SNKQVILKHFVTSDLKESDMEFKNTTIKLNVPEGCNAMVLRNLFLSCDPYMRLRMKKFEGSYI |
|
Parental | QSFTPGSPITGCGVAKVLKSGDSNFQEGDLVWGMIGWEEYSIVNATQSALFKIHDKNVPLSYYTGILGMP |
| .SFTPGSPITG.GVAKVL.SGDSNFQ.GDLV.G..GWEEYSIV.AT...LFKIHDK.VPLSYYTGILGMP |
Retrocopy | ESFTPGSPITGYGVAKVLESGDSNFQKGDLVLGRTGWEEYSIVTATPT-LFKIHDKDVPLSYYTGILGMP |
|
Parental | GMTAYVGFYEICSPKKGETVYVSAASGAVGQLVGQFAKTLGCYVVGSAGTKEKVDLLKNKLGFDEAFNYK |
| G.TAY.GFYE.CSPKKGETV.VSAASGAVGQLVGQFAK.LGCYVVGSAG.KEKVD.LK...GFDEAFNYK |
Retrocopy | GLTAYAGFYEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDRLKSTFGFDEAFNYK |
|
Parental | EEKDLVADLKRYFPNGIDIYFENVGGKMLDAVLMNMKLHGRIAVCGMISQYNLEKTEGVHNLFCLITKRI |
| EE.DL.A.LK.Y.P.GIDIYFENVGGKMLDAVL.NMK.HGRIAVCGMISQYNLE.TEGVHNLFCLI.KRI |
Retrocopy | EEQDLDAALKKYLPDGIDIYFENVGGKMLDAVLLNMKIHGRIAVCGMISQYNLEQTEGVHNLFCLISKRI |
|
Parental | RMEGFLVSDHYHLYPKYLEMIIPQIKAGNVVYVEDIAEGLENAPKALVGLFYGRNVGKQLVMVSRE |
| RMEGFLV.D.YHLYPKYL.MIIPQIKAG.VVYVEDIAEGLE.AP.ALVGLF.GRN.GKQ.VMVSRE |
Retrocopy | RMEGFLVHDYYHLYPKYLDMIIPQIKAGKVVYVEDIAEGLESAPSALVGLFSGRNIGKQVVMVSRE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_16 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.