>retro_slyc_28
ATGTCGTACAATTACATGTTCAAATTCATAATTGTGGGAGAAACCGGAGTGGGAAAAACTTGCCTGCTTTACCAATTGAC
ATCGGCGCGATTTAAACCGGTTTACGAGGTCACAATCGGAGCTGAATTCGGATCCAGAACGATCACCGTCGATCAGAAGC
CAATTAAGCTGCAAATATGGGACACGGCGGGACAGGAAAAGTTCCGATCACTCACGAGATATTTTTACAGAGGCGCTGTT
GGGGCTTTGCTAGTTTACGACGTGACTAAGCGGCAAACTTTCCAGCAACTCCCGAATTGGCTCGAGGATTTACGAAAACA
CGGCGATGAGAAATTGACGGTAATGGTGGTGGGGAACAAGTGCGATCTGGATGAAGAAACTAGGGCTGTTAGTAAGGAGG
AAGGCGAGGAATTTGCGAAGAGGAATAAGTGTTTGTTCATGGAAGTATCAGCTAGAACGGCGAAGAATGTGGAGGCGGCG
TTCGGAAGCGCGGCGGAAGAAATATGTGAGAAGATCGGAAAAGGGGATTTTGGGACGGTGGAGGGATATAAGGGGATTAC
AATTGGGAATTGGAGAGGAAAAAGTAAAAGATTTTACTCATGTTGTTTTTGA
ORF - retro_slyc_28 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.42 % |
Parental protein coverage: |
90.52 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKPIKLQIWDTAGQESFRS |
| MSY.Y.FK.II.G.TGVGK.CLL.Q.T..RF.PV...TIG.EFG.R..T.D.KPIKLQIWDTAGQE.FRS |
Retrocopy | MSYNYMFKFIIVGETGVGKTCLLYQLTSARFKPVYEVTIGAEFGSRTITVDQKPIKLQIWDTAGQEKFRS |
|
Parental | ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLVGNKSDLSHR-RAVSKEEGEQFAK |
| .TR..YRGA.GALLVYD.T.R.TF..L..WLED.R.H.....T.M.VGNK.DL....RAVSKEEGE.FAK |
Retrocopy | LTRYFYRGAVGALLVYDVTKRQTFQQLPNWLEDLRKHGDEKLTVMVVGNKCDLDEETRAVSKEEGEEFAK |
|
Parental | ENGLLFLEASARTAQSVEEAFIQTAAKILQKIQEGVFDVSNESSGIKVGYGR |
| .N..LF.E.SARTA..VE.AF...A..I..KI..G.F.......GI..G..R |
Retrocopy | RNKCLFMEVSARTAKNVEAAFGSAAEEICEKIGKGDFGTVEGYKGITIGNWR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_28 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.