>retro_slyc_29
ATGGAATCAAATAAGAGTAAAATACTGATAATCGGAGTAACAGGCCGTTTGGGTTTTGAACTAGCAAAGGCCAGTCTCAA
TTCCTCTCATCCCACATTCGGACTTGTTAGAGATTCAGCATTCTCTGACACTCATAAATCCCAAAAGATTCATACCCTTA
CCGAAGCGGGCCTCACAGTAATCAAGGGTTCATTGCAAGATGAAGATATCCTGCTTGAAGCACTCAAGCAAGTTGAGATC
GTGATTTCTGCTGTTTCATCTAAGCAAGTCCACGAACAAAAGATTCTGATTTCTGCTATAAAGCGTGCTGGTTGCATTAA
AAGGTTCCTCCCTTCAGAGTTCGGGGCTGACCCTGACAGAACTCAAGTTTCTGATTTGGACCACAACTTCTACTCGAGAA
AATCCGAGATTAGGCGTATTATTGAAGCTGAAGGCATTCCTTACACCTATGTCTGTTGTAACTTATTTACTAGTGTTCTC
CTATCGTCACTTGCTCAACCAGGTCGGAAAGCCCCTCCGAGAGATGAAGTCAGCATATTCGGTGATGGAACTGCTAAAGC
TGTCTTTATGAACGAAAATGATGTTGCTGCCTTTGTCATAAATACAGTGGACGATGCACGGACTCTGAACAAAGTGGTAT
ACATGAGGCCAAAGGGAAATGTGTATTCAATGAATGAGCTAGTAGGGATTTGGGAAGGAAAAATTGAGAAGACGCTAAAA
AAGATTTACATCACTGAAGATGAGCTCTTGAAGAAAATCCGAGATACCCCATATCCTGAGAATATGGAGTTGGTTTTCAT
ATACTCTACATTTGTTAAAGGAGATCAGACATACTTCAGCATAGAGTCTTCTGGTGGTTTGGAAGGGACACAGCTATATC
CACAAATAACATACACCACAGTAAGCGAATTTCTAGACACCTTGTTGTAA
ORF - retro_slyc_29 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.5 % |
Parental protein coverage: |
98.38 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AEKSKVLIIGGTGYIGKFVVEASAKSGHPTFALVRETTVSDPDKGKIVENFKNLGVTIINGDLYDHESLL |
| ..KSK.LIIG.TG..G.....AS..S.HPTF.LVR....SD..K..........G.T.I.G.L.D...LL |
Retrocopy | SNKSKILIIGVTGRLGFELAKASLNSSHPTFGLVRDSAFSDTHKSQKIHTLTEAGLTVIKGSLQDEDILL |
|
Parental | KAIKQVDVVISTVGAMQLADQVKIIDAIKEAGNIKRFFPSEFGMDVDKINAVEPAKSTFAVKVQIRRAIE |
| .A.KQV..VIS.V...Q...Q...I.AIK.AG.IKRF.PSEFG.D.D..............K..IRR.IE |
Retrocopy | EALKQVEIVISAVSSKQVHEQKILISAIKRAGCIKRFLPSEFGADPDRTQVSDLDHNFYSRKSEIRRIIE |
|
Parental | AAEIPYTNVSCNYFAGYFLPTLVQPGVTAPPRDKVIIPGDGNVKAVFNEEHDIGTYTIKAIDDPRTLNKT |
| A..IPYT.V.CN.F....L..L.QPG..APPRD.V.I.GDG..KAVF..E.D.....I...DD.RTLNK. |
Retrocopy | AEGIPYTYVCCNLFTSVLLSSLAQPGRKAPPRDEVSIFGDGTAKAVFMNENDVAAFVINTVDDARTLNKV |
|
Parental | LYIRPLKNTLSFNELVAIWEKLIGKTLEKIYVPEEQILKDIQTSPIPINIILAINHSTFVKGDQTNFEIE |
| .Y.RP..N..S.NELV.IWE..I.KTL.KIY..E...LK.I...P.P.N..L....STFVKGDQT.F.IE |
Retrocopy | VYMRPKGNVYSMNELVGIWEGKIEKTLKKIYITEDELLKKIRDTPYPENMELVFIYSTFVKGDQTYFSIE |
|
Parental | PSFGVEASELYPDVKYTTVEEYL |
| .S.G.E...LYP...YTTV.E.L |
Retrocopy | SSGGLEGTQLYPQITYTTVSEFL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_29 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.