>retro_slyc_30
ATGAACTCTGATGTTCACTCCCGTGCAAAGAGGATGAAGCTCATAATGCAATTTGGAGTTGGGTTAGAAGGTGTTGACAT
TACTGCTGCCACAAATCATTGCATTAAGGTCGCCAAAATTTCGGGTGGTGCAACTGGAAATGCTGCTTCATATGCTGAAA
TGGCCATATATCTCATCTTGGGCCTCCTGCGTAAGCAACATCAAATGAAAATTTCCGTGGAGCAGAAAAAGCTAGGGGAG
CCAACTGGTGTCAACCTGCATGGGAAAACGGTATTTATCCTGGGGTTTGGAAATATCGGGATACATTTAGCAAAGCGTCT
ACGCCCATTTGACGTGAAAATACTTGCTACAAAACGAAGTTGGGGCCGGCCTGCACAGGACTCGAGCAAATCCGAGGCAC
CGTCTGTTGAGAATGGTGGCTACGCTGACCTAGTTGACGAGAGGGGAAACCATGCTGATATCTTGAAGTTTGCAAGCAAA
GCTGATATTGTTGTATGTTGCTTAGCTATGAACAATGAAACTATTGGCATCGTGAACAACGATTTTATATCTGTCATGAG
AAAGGGTGTCGTTCTGATTAATATAGCTCAAAGGGAGGAGGATTGTCCAAGCCTTATAAAGATTCCACCCATCTGTCATT
CTTTTAACACTCCACCTCACGCCCAGTGCTTAGCATCTAGTGCGTGGGCAATTTTTAATTTTGGGGACCCCAACATCGGG
TGA
ORF - retro_slyc_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
95.43 % |
Parental protein coverage: |
70.11 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MNSDVLSRAKRMKLIMQFGVGLEGVDITAATKHGIKVAKIPGGATGNAASCAEMAIYLILGLLRKQHQMK |
| MNSDV.SRAKRMKLIMQFGVGLEGVDITAAT.H.IKVAKI.GGATGNAAS.AEMAIYLILGLLRKQHQMK |
Retrocopy | MNSDVHSRAKRMKLIMQFGVGLEGVDITAATNHCIKVAKISGGATGNAASYAEMAIYLILGLLRKQHQMK |
|
Parental | ISVEQKKLGEPTGVNLQGKTVFILGFGNIGIHLAKRLRPFDVKILATKRSWGRPAQDSSKSEAPSVENGG |
| ISVEQKKLGEPTGVNL.GKTVFILGFGNIGIHLAKRLRPFDVKILATKRSWGRPAQDSSKSEAPSVENGG |
Retrocopy | ISVEQKKLGEPTGVNLHGKTVFILGFGNIGIHLAKRLRPFDVKILATKRSWGRPAQDSSKSEAPSVENGG |
|
Parental | YADLVDERGNHADILKFASKADIVVCCLAMNNETIGIVNNDFISVMRKGAILINIAR |
| YADLVDERGNHADILKFASKADIVVCCLAMNNETIGIVNNDFISVMRKG..LINIA. |
Retrocopy | YADLVDERGNHADILKFASKADIVVCCLAMNNETIGIVNNDFISVMRKGVVLINIAQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_30 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.