>retro_slyc_39
ATGTCTTCCTTTCAGTTATCTCTCACCAATCCCAAACACAAAAGAAACCATACTTGTCTAGAAGTTTTTCCATTATGGAA
CACATTCAAATCCAACCTCTCTTTCCCAAACAAAAGACTTTCACCTAGCCTATCTTTGAAAACATCTTCATGTCTTTCAA
ATTTAGAGGACAACAATACTATTGAACTCCAACAATATGATGAAGAAGAGAAAAAACCCCTTCATGAGATGTGGAGAGAA
ATTCAAGGATGTAACAATTGGAAAGGTTTACTTGATCCTATGGATTGTCATCTTAGAAAAGAAATCATTCGTTATGGTGA
ATTTGCTCAATCTTGTTATGACTCATTTGACTATGATCCTCATTCAAAATATTGTGGTACTTGCAAGTATCAACCATCAC
AATTTTTTGACAAGATCAACATGTTGAAAAAAGGGTATGAAATGAAAAGGTACTTATATGCAACCTCAAATATCAACTTA
CCAAATTTCTTCCAAAAATCAAAAATGAGGAACGTTTGGAGCCAACACGCGAACTGGATGGGGTATGTAGCCGTAGCCAC
AGATCCTGAAGAAATAAAACGTTTAGGTAGACGTGACATAGTGGTTGCATGGCGTGGCACGGTCACATACCTAGAATGGA
TCCATGACCTACAAGACATTTTACATCCTGCTCATTTTCGCGATGATCCAAACATCAAGATTGAGACAGGGTTCTTCGAT
ATGTATACTAAAAAAGAAAATAATTGTCACTATGCTTCGTTTTCAGCTCGTGAACAAATTTTAGCGGAGATTAATAGATT
AATCGAAAAATACCAAGGTGAAGAGCTAAGTATCACCATAACAGGACATAGCCTTGGTGCAGCATTGGCTTTGTTAAGTG
CTTATGACATAGCTGAGATGAAATTAAATATTTTACATAATGGTAAGTCTATTACTAAAATTATTCCTATTACTGTTTTT
TCATTTGCTGGACCTAGGGTTGGAAATCTTAAATTTAAAGAAAGATGTGAAGAGCTTGGAATTAAAGTTTTAAGAGTTGT
GAATGTGCATGACAAAGTGCCGAAAGTGCCTGGAATTATTGCAAATGAGAAATTTCAATTCCAAAAGCAATTGGAAGAGA
AATTTTCATTTGCTTGGAGTTATGCTCATGTAGGGGCGGAGTTAGCTTTAGATCATCATCGTTCTCCTTTTCTAAAGCCC
AATAGTGATTTGGGCTCTGCTCATAACCTTGAGGCCCATTTACATCTTGTTGATGGGTACCATGGGAAGGTACGCGCCTT
TCGCTCTGCCACGAGTAGGGATGTTGCCCTAGTCAATAAGGATTCGAGTTTCTTGAAGGAGGAGTATGGTGTGCCACCAT
TTTGGTGGCAAGATGAGAACAAAGGCATGGTGAGAACGAGCGATGGGCAATGGGTGTTGCCGGAGAGGCCCATAATTGAG
GCCCATCCACCCGATACGGCCCATCATTTTCAACAAGTCCTTAAACTTGCGAGAGCTAGGTTAAATTTACCATAA
ORF - retro_slyc_39 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.27 % |
Parental protein coverage: |
79.08 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DRWLEIHGQDDWVGMLDPMDPLLRSELIRYGEMAQACYDAFDFDPYSKYCGSCKFPRRKFFDGLGMAEYG |
| ..W.EI.G...W.G.LDPMD..LR.E.IRYGE.AQ.CYD.FD.DP.SKYCG.CK.....FFD...M...G |
Retrocopy | EMWREIQGCNNWKGLLDPMDCHLRKEIIRYGEFAQSCYDSFDYDPHSKYCGTCKYQPSQFFDKINMLKKG |
|
Parental | YDITRYLYATSNINLPNFFKQSRWPKIWSKNANWIGYVAVSND-ETTKRLGRRDITIAWRGTVTRLEWIA |
| Y...RYLYATSNINLPNFF..S.....WS..ANW.GYVAV..D.E..KRLGRRDI..AWRGTVT.LEWI. |
Retrocopy | YEMKRYLYATSNINLPNFFQKSKMRNVWSQHANWMGYVAVATDPEEIKRLGRRDIVVAWRGTVTYLEWIH |
|
Parental | DLMDYLRPISSDNIPCPDPNVKVESGFLDLYTDKDESCRYCKFSAREQILTEVKRLIEMYPDEEMSITVT |
| DL.D.L.P......P....N.K.E.GF.D.YT.K...C.Y..FSAREQIL.E..RLIE.Y..EE.SIT.T |
Retrocopy | DLQDILHPAHFRDDP----NIKIETGFFDMYTKKENNCHYASFSAREQILAEINRLIEKYQGEELSITIT |
|
Parental | GHSLGSALAILSAYDLVETGLNV----KADTSGVPICVFSFSGPRVGNVRFKERIEKLGVKVLRVVNVHD |
| GHSLG.ALA.LSAYD..E..LN.....K..T...PI.VFSF.GPRVGN..FKER.E.LG.KVLRVVNVHD |
Retrocopy | GHSLGAALALLSAYDIAEMKLNILHNGKSITKIIPITVFSFAGPRVGNLKFKERCEELGIKVLRVVNVHD |
|
Parental | IVPKSPGLVLNEHSPSMVMKICEKLPWSYS--HVGVELALDHKNSPFLKPTSDLVCAHNLEAHLHLLDGY |
| .VPK.PG...NE..........EK.....S..HVG.ELALDH..SPFLKP.SDL..AHNLEAHLHL.DGY |
Retrocopy | KVPKVPGIIANEKF-QFQKQLEEKFSFAWSYAHVGAELALDHHRSPFLKPNSDLGSAHNLEAHLHLVDGY |
|
Parental | HGKGRRFVLEKGIDIPLVNK |
| HGK.R.F......D..LVNK |
Retrocopy | HGKVRAFRSATSRDVALVNK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_39 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.