>retro_slyc_46
ATGAACCCTTCATCTTCAACTACTGGGGGTGCTGGATCTGATGATAATACTTCAATTAGAAGAAATTCAAACCGACCCAA
GTATTCAAGATTCACTCAACAGGAACTTCCAGCTTGCAAACCGATTCTAACTCCAAAATGGGTGATTTCTGTTTTTTTAC
TTGTTGGTATTGTGTTTATCCCAATTGGGGTTGTTTCACTTTTAGCATCTAGAGATGTTGTTGAAATTGTTGATCGTTAT
GATTCTGAATGTGTGCCATCGAATATGACAAATGATAAAATTAGGTTTATAACAAATGATAGTTTTGATAAAACATGTAT
TAGGACTTTGACTGTGCCTAAGAAAATGAAGCAGCCTATTTATATTTATTATCAGCTTGAGAATTATTATCAGAATCATC
GTAGGTATGTTAAAAGTCGAAGTGATCAGCAGTTGAAAAGTGCTAGTAGAAGGGATGATACTGGTACTTGTGACCCCGAA
GATCGTGTTAATGGTTTACCAATTGTGCCTTGTGGTTTGATTGCTTGGAGTTTGTTCAATGATACTTATAATTTTAGTAT
TGTTAATAATATTAATAAGCGGTTGGATGTGAACAAAAATGGTATAGCTTGGAAGAGTGATAGGGATCATAAGTTTGGAA
AAGATGTTTTTCCGTCAAACTTTCAGAATGGGACACTAATCGGGGGTGGGAAGCTTACGAATGAATCGTTGGACAAGCAA
GAAAATCTAATTGTTTGGATGAGAACTGCTGCACTTCCGACGTTTAGGAAGTTGTATGGGAAGATAGAAGTGGATCTGGA
GGCGGGTGAACGGTTAAACGTGACGGTGCTGAACAATTACAATACTTATAGTTTCGATGGAAAGAAGAAGCTTGTGCTTT
CTACAACTAGCTGGATTGGCGGAAAGAATGATTTTCTTGGTATTGCTTATCTTACTGTAGGTGGATTGTGTTTCTTTCTG
GCCATGGCTTTCACGATCGTGTATCTAGTTAAGCCAAGGCAGCTTGGAGATCCAACATACTTGTCGTGGAACCGGAACCC
GGGAGGTAACTAG
ORF - retro_slyc_46 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.48 % |
Parental protein coverage: |
96.49 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | PSTLSGNGAQSVESRSHPVRRHLDDAVY-QFTQQNLPACKPVLTPAWVISMFFLIGVIFIPIGLLCLYAS |
| PS.....GA.S....S...RR......Y..FTQQ.LPACKP.LTP.WVIS.F.L.G..FIPIG...L.AS |
Retrocopy | PSSSTTGGAGSDDNTS--IRRNSNRPKYSRFTQQELPACKPILTPKWVISVFLLVGIVFIPIGVVSLLAS |
|
Parental | ESVIEIVDRYDIDCVPDNLKSQKVAYIKDNSVSKNCTRYLKVPQNMKAPIYIYYQLDNYYQNHRRYVKSR |
| ..V.EIVDRYD..CVP.N....K...I...S..K.C.R.L.VP..MK.PIYIYYQL.NYYQNHRRYVKSR |
Retrocopy | RDVVEIVDRYDSECVPSNMTNDKIRFITNDSFDKTCIRTLTVPKKMKQPIYIYYQLENYYQNHRRYVKSR |
|
Parental | SDKQLLHGLQYNDTSSCNPEGENNGLPIVPCGLIAWSLFNDTY--SFFNGADA-INVNRKNIAWRSDREH |
| SD.QL.......DT..C.PE...NGLPIVPCGLIAWSLFNDTY..S..N.......VN...IAW.SDR.H |
Retrocopy | SDQQLKSASRRDDTGTCDPEDRVNGLPIVPCGLIAWSLFNDTYNFSIVNNINKRLDVNKNGIAWKSDRDH |
|
Parental | KYGKDVYPFNFQSGPLIGGATLDPDIPLSDQENLIVWMRTAALPTFRKLYGKIEVDLEEGDLIMVNLVNN |
| K.GKDV.P.NFQ.G.LIGG..L.....L..QENLIVWMRTAALPTFRKLYGKIEVDLE.G....V...NN |
Retrocopy | KFGKDVFPSNFQNGTLIGGGKLTNE-SLDKQENLIVWMRTAALPTFRKLYGKIEVDLEAGERLNVTVLNN |
|
Parental | YNTYSFGGRKKLVLSTTSWLGGRNNFLGMSYVTVGSSFIFLAFVFLLLHVKNPR |
| YNTYSF.G.KKLVLSTTSW.GG.N.FLG..Y.TVG....FLA..F.......PR |
Retrocopy | YNTYSFDGKKKLVLSTTSWIGGKNDFLGIAYLTVGGLCFFLAMAFTIVYLVKPR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_46 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.