>retro_slyc_67
AGGCCTAGAAGTTTTGACTCGGAGGCTAGAAAGATATGCTGGTCCAAAGCAGAGAAAGTTCCAGGTCGAGATCCTGAGAG
GTGGAGAAAAGATGTAGCTGGCAACATTATTGGCAAGCGATTCCACAGCTGCCAAGGTTGCCTCTGCTTTGAGTATGATC
ACATTGTTCCCTTCTCTAAAGGTGGTGATTCAGTGTCAGATAACTGTCAAATTCTTCAAACAAGGGTGAATAGATCTAAA
GCAGACAAGGTTGCAGTTGACACAAAACATTTGAAAGGATATTCTTGTGACATCAACTTCAGCGACAATGACCTTGACAA
GATTGAGATGGCTGTTTATGGGGATATTAAGCGGTCAGACAATCAATGCCGTGTTCAAACAATAGATGAAATAATGGGGA
AATACAAGTCCAAGAATGGCATTGCTAGCTGC
ORF - retro_slyc_67 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.58 % |
Parental protein coverage: |
78.26 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RARSFDGEAKRMCWAKAETVPGRHPERWRKDSAGNILCKRLFNCQGCLCFEYDHIIPFSKGGESIAENCQ |
| R.RSFD.EA...CW.KAE.VPGR.PERWRKD.AGNI..KR...CQGCLCFEYDHI.PFSKGG.S...NCQ |
Retrocopy | RPRSFDSEARKICWSKAEKVPGRDPERWRKDVAGNIIGKRFHSCQGCLCFEYDHIVPFSKGGDSVSDNCQ |
|
Parental | ILQTRVNRLKSNKDEIDVSRLKSYSCDIKFTVKELDVIEMAVYGDVLRPGKQCRCRTVAEMLGQYKSKDR |
| ILQTRVNR.K..K...D...LK.YSCDI.F....LD.IEMAVYGD..R...QCR..T..E..G.YKSK.. |
Retrocopy | ILQTRVNRSKADKVAVDTKHLKGYSCDINFSDNDLDKIEMAVYGDIKRSDNQCRVQTIDEIMGKYKSKNG |
|
Parental | TAPC |
| .A.C |
Retrocopy | IASC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_67 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.